PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g020720.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 29075.9 Da PI: 9.966 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.7 | 4.8e-31 | 25 | 74 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+++fs++g+lyey+ Sopen02g020720.2 25 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYA 74 79***********************************************8 PP | |||||||
2 | K-box | 105.7 | 5.8e-35 | 92 | 190 | 3 | 100 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk.ekelqeenkaL 94 +s++ s++ea+a+++qqe++kL+++i nL +++R+++Ge L ++lkeL++Leq++ek+++kiRskKnell+++ie++qk+ e +l+++n++L Sopen02g020720.2 92 SSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKRqEVDLHNNNQYL 184 3445559************************************************************************983569******** PP K-box 95 rkklee 100 r+k++e Sopen02g020720.2 185 RAKIAE 190 ***986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.445 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.0E-40 | 17 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.61E-45 | 18 | 94 | No hit | No description |
SuperFamily | SSF55455 | 6.28E-33 | 18 | 90 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 19 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-33 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-26 | 26 | 73 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-33 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 9.1E-33 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.5E-25 | 101 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.522 | 103 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048440 | Biological Process | carpel development | ||||
GO:0048443 | Biological Process | stamen development | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDFQSDLTRE ISPQRKLGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE LSVLCDAEVA 60 LVVFSNRGRL YEYANNSVKA TIERYKKACS DSSNTGSVSE ANAQYYQQEA SKLRAQIGNL 120 MNQNRNMMGE ALAGMKLKEL KNLEQRIEKG ISKIRSKKNE LLFAEIEYMQ KRQEVDLHNN 180 NQYLRAKIAE TERAQHQHQH QQMNLMPGSS SSYHELVPPP QQFDSRNYLQ VNGLQTNNHY 240 PRQDQPPIQL V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 8e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_B | 8e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_C | 8e-20 | 17 | 85 | 1 | 69 | MEF2C |
5f28_D | 8e-20 | 17 | 85 | 1 | 69 | MEF2C |
6byy_A | 8e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_B | 8e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_C | 8e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6byy_D | 8e-20 | 17 | 85 | 1 | 69 | MEF2 CHIMERA |
6c9l_A | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 6e-20 | 17 | 85 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00609 | ChIP-seq | Transfer from AT4G18960 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | TOMTAG1A | 0.0 | L26295.1 Lycopersicon esculentum TAG1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064366.1 | 0.0 | floral homeotic protein AGAMOUS isoform X1 | ||||
Refseq | XP_027770165.1 | 0.0 | floral homeotic protein AGAMOUS isoform X2 | ||||
Swissprot | Q40168 | 0.0 | AG_SOLLC; Floral homeotic protein AGAMOUS | ||||
TrEMBL | A0A0V0HS60 | 1e-173 | A0A0V0HS60_SOLCH; Putative floral homeotic protein AGAMOUS-like | ||||
STRING | Solyc02g071730.2.1 | 1e-180 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-120 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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