PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g020200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 316aa    MW: 36110.1 Da    PI: 7.0027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g020200.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.21.6e-33168225259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+
  Sopen02g020200.1 168 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSIVITTYEGQHNHH 225
                       8********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-35153227IPR003657WRKY domain
SuperFamilySSF1182901.27E-29159227IPR003657WRKY domain
PROSITE profilePS5081132.42162227IPR003657WRKY domain
SMARTSM007745.9E-39167226IPR003657WRKY domain
PfamPF031065.0E-26168225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MGDELRDLYY HQPFQEDIKH DSSMVQNIHM LDPSFMSYTS EYLHGSSSDY ITNNSLGKPF  60
GFSTLSSLKD DDIIKQDHVD ANVNYISNNN DVVGGSETPV TPNSSISNSS SNGDHEDSNK  120
KDKQVKDETL EDGEDASKKE SKAKKKGEKK QRPPKFAFMT KSEVDHLEDG YRWRKYGQKA  180
VKNSPYPRSY YRCTSQKCQV KKRVERSYQD PSIVITTYEG QHNHHLPATL RGSVARMLNP  240
SMLAQPSPLM APQASFHQEF IMSQMPQFYG HANVFANSSM YHQNLNHQQM QLPHPHHDYG  300
LLQDMVPSVF NLKQEP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-281602281078Probable WRKY transcription factor 4
2lex_A5e-281602281078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065272.10.0WRKY transcription factor 71-like
TrEMBLM1AL070.0M1AL07_SOLTU; Uncharacterized protein
STRINGSolyc02g071130.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14852475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.13e-55WRKY DNA-binding protein 71