PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g020200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 316aa MW: 36110.1 Da PI: 7.0027 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.2 | 1.6e-33 | 168 | 225 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C+vkk+vers +dp++v++tYeg+Hnh+ Sopen02g020200.1 168 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCQVKKRVERSYQDPSIVITTYEGQHNHH 225 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.1E-35 | 153 | 227 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-29 | 159 | 227 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.42 | 162 | 227 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.9E-39 | 167 | 226 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.0E-26 | 168 | 225 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 316 aa Download sequence Send to blast |
MGDELRDLYY HQPFQEDIKH DSSMVQNIHM LDPSFMSYTS EYLHGSSSDY ITNNSLGKPF 60 GFSTLSSLKD DDIIKQDHVD ANVNYISNNN DVVGGSETPV TPNSSISNSS SNGDHEDSNK 120 KDKQVKDETL EDGEDASKKE SKAKKKGEKK QRPPKFAFMT KSEVDHLEDG YRWRKYGQKA 180 VKNSPYPRSY YRCTSQKCQV KKRVERSYQD PSIVITTYEG QHNHHLPATL RGSVARMLNP 240 SMLAQPSPLM APQASFHQEF IMSQMPQFYG HANVFANSSM YHQNLNHQQM QLPHPHHDYG 300 LLQDMVPSVF NLKQEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-28 | 160 | 228 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 5e-28 | 160 | 228 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065272.1 | 0.0 | WRKY transcription factor 71-like | ||||
TrEMBL | M1AL07 | 0.0 | M1AL07_SOLTU; Uncharacterized protein | ||||
STRING | Solyc02g071130.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1485 | 24 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 3e-55 | WRKY DNA-binding protein 71 |