PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g018990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 834aa    MW: 91906.9 Da    PI: 6.3797
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g018990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.78.3e-18563357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++p+  +r +L +++    +++ +q+kvWFqNrR +ek+
  Sopen02g018990.1  5 KYVRYTPEQVEALERVYAECPKPTSLKRHQLIRECsilsNIDPKQIKVWFQNRRCREKQ 63
                      6789*****************************************************97 PP
2bZIP_122.13.3e-0757981859
                      HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59
                      rr+R++ ++e  +L++   +L+a Nk L +e+++l+k+v+ l
  Sopen02g018990.1 57 RRCREKQRKEASHLQTVNRKLTAMNKLLMEENDRLQKHVSHL 98
                      9*************************************9977 PP
3START167.78.2e-531543602203
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e++ ka  ++  Wv++  +++g+e++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W + ++  ++l+vi +g  g+++
  Sopen02g018990.1 154 IAEETLTEFLGKARGTAVDWVQMIGMKPGPESIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRPSWYRECRCLDILNVIPTGngGTIE 245
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++ +++a+++l+p Rdf+++Ry+ +l++g++vi+++S++s++  p      s+vRa++lpSg+li+p+++g+s +++v+h+dl++ +++++l
  Sopen02g018990.1 246 LIYLQTYAPTTLAPaRDFWTLRYTTSLEDGSLVICERSLTSNTGSPVgppATSSVRAKMLPSGFLIRPCEGGGSIIHIVDHIDLDACSVPEVL 338
                       *******************************************99998999****************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXX CS
             START 182 rslvksglaegaktwvatlqrq 203
                       r+l++s+ + ++k+++a++++ 
  Sopen02g018990.1 339 RPLYESSKILAQKMTMAAFRYI 360
                       *****************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.451164IPR001356Homeobox domain
SMARTSM003891.5E-15268IPR001356Homeobox domain
CDDcd000869.10E-16565No hitNo description
PfamPF000462.2E-15563IPR001356Homeobox domain
SuperFamilySSF466895.99E-17569IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.0E-18763IPR009057Homeodomain-like
CDDcd146861.08E-55793No hitNo description
PROSITE profilePS5084826.025144372IPR002913START domain
CDDcd088752.93E-69148364No hitNo description
Gene3DG3DSA:3.30.530.202.0E-19152343IPR023393START-like domain
SMARTSM002341.2E-48153363IPR002913START domain
PfamPF018523.4E-50154361IPR002913START domain
SuperFamilySSF559611.65E-33154365No hitNo description
PfamPF086701.9E-46688833IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MDSSKYVRYT PEQVEALERV YAECPKPTSL KRHQLIRECS ILSNIDPKQI KVWFQNRRCR  60
EKQRKEASHL QTVNRKLTAM NKLLMEENDR LQKHVSHLVY DNGFMRQQLH TVNSTTTDTC  120
CDSVVVSGQQ QQQNPMPQHH PQRDADSPAG LLAIAEETLT EFLGKARGTA VDWVQMIGMK  180
PGPESIGIVA VSRNCNGVAA RACGLVSLEP MKVAEILKDR PSWYRECRCL DILNVIPTGN  240
GGTIELIYLQ TYAPTTLAPA RDFWTLRYTT SLEDGSLVIC ERSLTSNTGS PVGPPATSSV  300
RAKMLPSGFL IRPCEGGGSI IHIVDHIDLD ACSVPEVLRP LYESSKILAQ KMTMAAFRYI  360
RQIAQETSGE IQYAGGRQPA VLRAFSQRLC RGFNNAVSGF IDDGWTIMGS DGVDDVTIAV  420
NSSPSKFLDA QYNTLSILPT FGGVLCARAS MLLQDVCPAL LVRFLREHRS EWADYGVDAY  480
SSASLKASPY AVPCARPGVF PSSQVILPLA QTVEHEEFLE VVRLEGHAFS PEDIALSRDM  540
YLLQLCSGVE ENATGACAQL VFAHIDESFG DDAPLLPSGF SVIPLEPKSD SPSAARTLDL  600
ASTLEARTGG TRPAGEVEGS SYNHRSVLTI AFQFAFENHY RENVAAMARQ YVRSIVGSVQ  660
RVAMAIAPSR LCSQLTPKSF PGSPEAVTLA RWICRSYKNH TGGELLQMDS QAAGDAVLKQ  720
LWHHTDSIMC CSVKMNDSAF FSFANQAGLD MLETTLIALQ DIMLDKILDE AGRKVLLSEF  780
PKIMQQGFAY LPAGLCVSSM GRPVSYEQAV AWKVLNDDNS NHCLAFMFTN WSFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066842.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotO042910.0ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14
TrEMBLM1BWB20.0M1BWB2_SOLTU; Uncharacterized protein
STRINGSolyc02g069830.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  3. Müller CJ, et al.
    PHABULOSA Mediates an Auxin Signaling Loop to Regulate Vascular Patterning in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 956-70
    [PMID:26637548]
  4. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  5. Kim ES, et al.
    HAWAIIAN SKIRT regulates the quiescent center-independent meristem activity in Arabidopsis roots.
    Physiol Plant, 2016. 157(2): p. 221-33
    [PMID:26968317]
  6. Husbands AY,Aggarwal V,Ha T,Timmermans MC
    In Planta Single-Molecule Pull-Down Reveals Tetrameric Stoichiometry of HD-ZIPIII:LITTLE ZIPPER Complexes.
    Plant Cell, 2016. 28(8): p. 1783-94
    [PMID:27385814]
  7. Di Ruocco G, et al.
    Differential spatial distribution of miR165/6 determines variability in plant root anatomy.
    Development, 2018.
    [PMID:29158439]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Hashimoto K,Miyashima S,Sato-Nara K,Yamada T,Nakajima K
    Functionally Diversified Members of the MIR165/6 Gene Family Regulate Ovule Morphogenesis in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(5): p. 1017-1026
    [PMID:29462472]