PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g018580.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family LBD
Protein Properties Length: 161aa    MW: 17970.4 Da    PI: 8.1266
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g018580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601444.3e-45111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+C +dCv++pyfpa++p+kfanvhk+FGasnv+k+l++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++
  Sopen02g018580.1  11 PCAACKLLRRRCGHDCVFSPYFPADEPHKFANVHKVFGASNVSKMLQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQ 103
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  Sopen02g018580.1 104 LAMTQAE 110
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.50210111IPR004883Lateral organ boundaries, LOB
PfamPF031959.9E-4511108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MKECGKNSSS PCAACKLLRR RCGHDCVFSP YFPADEPHKF ANVHKVFGAS NVSKMLQELP  60
EHKRGDAVSS MVYEANARVR DPVYGCVGAI SSLQQQIDML RTQLAMTQAE VVQLRLRQST  120
NITNSPPNSG SPIMGSQPKG YYHMDLDVDQ SNTFNEPMWP Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-4771277127LOB family transfactor Ramosa2.1
5ly0_B3e-4771277127LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-178HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065655.11e-120LOB domain-containing protein 4-like
SwissprotQ9SHE91e-63LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A3Q7F3831e-118A0A3Q7F383_SOLLC; Uncharacterized protein
STRINGSolyc02g069440.2.11e-119(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-66LOB domain-containing protein 4