PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen02g017690.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 798aa MW: 91026.2 Da PI: 8.3165 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 82.5 | 7.2e-26 | 100 | 206 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwe 77 Y+eYAk++GFs +++s++s+ +g++++++fvCs++g+++e +++ ++k r +r+ ++t+Cka+l+vk+++dg+w+ Sopen02g017690.2 100 HYKEYAKSIGFSSIIKASRRSRISGKFIDAKFVCSRYGSKREPSTSgaepvpstdaagsnpvkRKKGRINRSWSKTDCKACLHVKRRSDGRWV 192 6****************************************999999*************998889999************************ PP FAR1 78 vtkleleHnHelap 91 ++++++eHnHe++p Sopen02g017690.2 193 IHTFVKEHNHEIFP 206 ***********975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-23 | 100 | 206 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.9E-27 | 323 | 416 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.361 | 603 | 639 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.7E-8 | 604 | 638 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 614 | 641 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 798 aa Download sequence Send to blast |
MVMDLVPPSG DHHEKEDCGR RTCVRIESAR GKLCGTDGAT VTASKSVCLG IENAGTSWNE 60 RTSNGANVLP NTDSLAVNCY RNLEPHDGME FDSKENAFSH YKEYAKSIGF SSIIKASRRS 120 RISGKFIDAK FVCSRYGSKR EPSTSGAEPV PSTDAAGSNP VKRKKGRINR SWSKTDCKAC 180 LHVKRRSDGR WVIHTFVKEH NHEIFPDWTR YPPGHRNIDL GKNDADAFHA IRGRTEKTYA 240 STSRHSGFMK KVEKQKNGGT NSSPQSLALD EGDAQVILEY FLCMQDENPN FFYALDLNQE 300 KRLRNVFWID AKCRLDCGNF SDVVLFDTTY ITDEYKLQFV PFIGVNHHFQ SILLGCGLIA 360 DESKSTFIWL MRAWLRALGG QVPKVILTDQ GKTLEEVIAE VLPDSRHCFC LWHVLSKIQE 420 KLGHVIRQHE SFLSKFNKCI LRSATNELFE KRWWKVVARF DLRNDLWIKS LYEDRLRWVP 480 TYMNKIFLAG MSTMQRVESV SALLDKCILC KTTLKEFLDQ YKKLLQEKCQ GEANADFETR 540 HKQPGLKSPS PFEKQMSTLY THTTFKKFQV EVLGVVACHP KKENDDGENG TYRVQDFEVN 600 QEFIVVWNER TSDTSCSCHL FEYNGFLCRH VMIVLQMAGV HTIPSKYVLR RWTKGAKSRE 660 KTRQVALVDS RVQRYNDLCQ RAFELGDEGS LSQESYNILS SVLENFLRTR ETVNDANLNE 720 SEPCSLPNQG LNDLEVFTDR NNSSKSNGKN IARKEKEGQI DFGESTVDYP FGSHSAIQPM 780 ATYIPEFHFL MATTAAPK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269|PubMed:11889039, ECO:0000269|PubMed:12753585, ECO:0000269|PubMed:18033885, ECO:0000269|PubMed:22634759}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269|PubMed:18033885}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066890.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_015066891.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X1 | ||||
Refseq | XP_027770470.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1 isoform X2 | ||||
Swissprot | Q9SWG3 | 0.0 | FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1 | ||||
TrEMBL | A0A3Q7F0W4 | 0.0 | A0A3Q7F0W4_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g068550.1.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G15090.1 | 0.0 | FAR1 family protein |