PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g017690.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

FAR1

Protein Properties

Length: 841aa MW: 95641.5 Da PI: 8.1682

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g017690.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	82.4	7.8e-26	100	206	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkaklkvkkekdgkwe 77 Y+eYAk++GFs +++s++s+ +g++++++fvCs++g+++e +++ ++k r +r+ ++t+Cka+l+vk+++dg+w+ Sopen02g017690.1 100 HYKEYAKSIGFSSIIKASRRSRISGKFIDAKFVCSRYGSKREPSTSgaepvpstdaagsnpvkRKKGRINRSWSKTDCKACLHVKRRSDGRWV 192 6**************************************999999*********998889999******************** PP FAR1 78 vtkleleHnHelap 91 ++++++eHnHe++p Sopen02g017690.1 193 IHTFVKEHNHEIFP 206 *********975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-23	100	206	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.0E-27	323	416	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.361	603	639	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.0E-8	604	638	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-6	614	641	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MVMDLVPPSG DHHEKEDCGR RTCVRIESAR GKLCGTDGAT VTASKSVCLG IENAGTSWNE 60 RTSNGANVLP NTDSLAVNCY RNLEPHDGME FDSKENAFSH YKEYAKSIGF SSIIKASRRS 120 RISGKFIDAK FVCSRYGSKR EPSTSGAEPV PSTDAAGSNP VKRKKGRINR SWSKTDCKAC 180 LHVKRRSDGR WVIHTFVKEH NHEIFPDWTR YPPGHRNIDL GKNDADAFHA IRGRTEKTYA 240 STSRHSGFMK KVEKQKNGGT NSSPQSLALD EGDAQVILEY FLCMQDENPN FFYALDLNQE 300 KRLRNVFWID AKCRLDCGNF SDVVLFDTTY ITDEYKLQFV PFIGVNHHFQ SILLGCGLIA 360 DESKSTFIWL MRAWLRALGG QVPKVILTDQ GKTLEEVIAE VLPDSRHCFC LWHVLSKIQE 420 KLGHVIRQHE SFLSKFNKCI LRSATNELFE KRWWKVVARF DLRNDLWIKS LYEDRLRWVP 480 TYMNKIFLAG MSTMQRVESV SALLDKCILC KTTLKEFLDQ YKKLLQEKCQ GEANADFETR 540 HKQPGLKSPS PFEKQMSTLY THTTFKKFQV EVLGVVACHP KKENDDGENG TYRVQDFEVN 600 QEFIVVWNER TSDTSCSCHL FEYNGFLCRH VMIVLQMAGV HTIPSKYVLR RWTKGAKSRE 660 KTRQVALVDS RVQRYNDLCQ RAFELGDEGS LSQESYNILS SVLENFLRTR ETVNDANLNE 720 SEPCSLPNQG LNDLEVFTDR NNSSKSNGKN IARKEKEGQI DFGESTVDYP FGSHSAIQPM 780 GQLNTNIQGY ANHLNMLGLG QLSTLVSIED GPYLSQPRLH GLVLSIHYVK SFCCCCFAEV 840 G

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MVMDLVPPSG DHHEKEDCGR RTCVRIESAR GKLCGTDGAT VTASKSVCLG IENAGTSWNE  60
RTSNGANVLP NTDSLAVNCY RNLEPHDGME FDSKENAFSH YKEYAKSIGF SSIIKASRRS  120
RISGKFIDAK FVCSRYGSKR EPSTSGAEPV PSTDAAGSNP VKRKKGRINR SWSKTDCKAC  180
LHVKRRSDGR WVIHTFVKEH NHEIFPDWTR YPPGHRNIDL GKNDADAFHA IRGRTEKTYA  240
STSRHSGFMK KVEKQKNGGT NSSPQSLALD EGDAQVILEY FLCMQDENPN FFYALDLNQE  300
KRLRNVFWID AKCRLDCGNF SDVVLFDTTY ITDEYKLQFV PFIGVNHHFQ SILLGCGLIA  360
DESKSTFIWL MRAWLRALGG QVPKVILTDQ GKTLEEVIAE VLPDSRHCFC LWHVLSKIQE  420
KLGHVIRQHE SFLSKFNKCI LRSATNELFE KRWWKVVARF DLRNDLWIKS LYEDRLRWVP  480
TYMNKIFLAG MSTMQRVESV SALLDKCILC KTTLKEFLDQ YKKLLQEKCQ GEANADFETR  540
HKQPGLKSPS PFEKQMSTLY THTTFKKFQV EVLGVVACHP KKENDDGENG TYRVQDFEVN  600
QEFIVVWNER TSDTSCSCHL FEYNGFLCRH VMIVLQMAGV HTIPSKYVLR RWTKGAKSRE  660
KTRQVALVDS RVQRYNDLCQ RAFELGDEGS LSQESYNILS SVLENFLRTR ETVNDANLNE  720
SEPCSLPNQG LNDLEVFTDR NNSSKSNGKN IARKEKEGQI DFGESTVDYP FGSHSAIQPM  780
GQLNTNIQGY ANHLNMLGLG QLSTLVSIED GPYLSQPRLH GLVLSIHYVK SFCCCCFAEV  840
G

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CACGCGC-3'. Activates the expression of FHY1 and FHL involved in light responses. Positive regulator of chlorophyll biosynthesis via the activation of HEMB1 gene expression. {ECO:0000269\|PubMed:11889039, ECO:0000269\|PubMed:12753585, ECO:0000269\|PubMed:18033885, ECO:0000269\|PubMed:22634759}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated after exposure to far-red light. Subject to a negative feedback regulation by PHYA signaling. {ECO:0000269\|PubMed:18033885}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066890.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Refseq	XP_015066891.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1 isoform X1
Swissprot	Q9SWG3	0.0	FAR1_ARATH; Protein FAR-RED IMPAIRED RESPONSE 1
TrEMBL	A0A3Q7F0W4	0.0	A0A3Q7F0W4_SOLLC; Uncharacterized protein
STRING	Solyc02g068550.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA496	21	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	0.0	FAR1 family protein

Publications ? help Back to Top
Domergue F, et al. Three Arabidopsis fatty acyl-coenzyme A reductases, FAR1, FAR4, and FAR5, generate primary fatty alcohols associated with suberin deposition. Plant Physiol., 2010. 153(4): p. 1539-54 [PMID:20571114] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Wang C, et al. SCAB3 Is Required for Reorganization of Actin Filaments during Light Quality Changes. J Genet Genomics, 2015. 42(4): p. 161-8 [PMID:25953354] Wang W, et al. A pair of light signaling factors FHY3 and FAR1 regulates plant immunity by modulating chlorophyll biosynthesis. J Integr Plant Biol, 2016. 58(1): p. 91-103 [PMID:25989254] Ma L, et al. Arabidopsis FHY3 and FAR1 Regulate Light-Induced myo-Inositol Biosynthesis and Oxidative Stress Responses by Transcriptional Activation of MIPS1. Mol Plant, 2016. 9(4): p. 541-57 [PMID:26714049] Siddiqui H,Khan S,Rhodes BM,Devlin PF FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. Front Plant Sci, 2016. 7: p. 175 [PMID:26941752] Liu L,Li B,Liu X FAR-RED ELONGATED HYPOCOTYL3 promotes floral meristem determinacy in Arabidopsis. Plant Signal Behav, 2016. 11(10): p. e1238545 [PMID:27660915] Ma L,Xue N,Fu X,Zhang H,Li G Arabidopsis thaliana FAR-RED ELONGATED HYPOCOTYLS3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1) modulate starch synthesis in response to light and sugar. New Phytol., 2017. 213(4): p. 1682-1696 [PMID:27859295] Liu Y, et al. Light and Ethylene Coordinately Regulate the Phosphate Starvation Response through Transcriptional Regulation of PHOSPHATE STARVATION RESPONSE1. Plant Cell, 2017. 29(9): p. 2269-2284 [PMID:28842534] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]