PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g017300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | TCP | ||||||||
Protein Properties | Length: 268aa MW: 28588.9 Da PI: 9.5539 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.1 | 5.5e-37 | 34 | 131 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg......... 88 + +++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ s s+ Sopen02g017300.1 34 APKRKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAASVSQQGISVSAgsmiesgan 126 5678**************************************************************888666666655522222344444433 PP TCP 89 ....k 89 Sopen02g017300.1 127 iagsG 131 33330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.8E-31 | 36 | 153 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.256 | 37 | 91 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 268 aa Download sequence Send to blast |
MDPKQANNNN IKSTHDQIKD LQILKNDETK KAAAPKRKDR HTKVEGRGRR IRMPALCAAR 60 IFQLTRELGH KSDGETIQWL LQQAEPSIIA ATGTGTIPAS ALAAAASVSQ QGISVSAGSM 120 IESGANIAGS GSSRSSNSRT NWPMICGNFG RPHLATAGMW PAPAPVVTSF GFQSSSAPSS 180 SDSSNYYLQK IGFPGFDLPA ATSVNPMSFT SILGGSNQQL PGLELGLSQE GHLGVLNQIY 240 QQARMQHPQQ QQQQQQQSPE EDSQGSGH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064091.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 3e-66 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A3Q7F1A0 | 1e-152 | A0A3Q7F1A0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g068200.1.1 | 1e-153 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA248 | 24 | 201 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-61 | TCP family protein |