PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016570.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 441aa    MW: 48351.8 Da    PI: 6.6606
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016570.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.47.2e-29205263259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK  +g+++prsYYrC+ a  Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Sopen02g016570.1 205 NDGCQWRKYGQKISRGNPCPRSYYRCSVApLCPVRKQVQRCLEDMSILITTYEGTHNHS 263
                       8***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-30189265IPR003657WRKY domain
SuperFamilySSF1182901.09E-25196265IPR003657WRKY domain
PROSITE profilePS5081127.267199265IPR003657WRKY domain
SMARTSM007743.1E-34204264IPR003657WRKY domain
PfamPF031061.8E-25205262IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MEKKMDNSIS SANNHEEEDI KKISKDDEFK SAIAEVNEIK LENARLKLLL QQIEKDYTSL  60
QTRFFNICQP DLKKSGGSPT CTHENIADEE ESELVSLRLG RSPSPSEYKK VDKKRSYDKT  120
IEDSPSCNDQ SNNGLKLGLD YSTGVSESEF IKPSNDPSPG PTSEVVKTVK KCDDESIKKD  180
DEVSQPNVKR ARVSVRTKCD YPTINDGCQW RKYGQKISRG NPCPRSYYRC SVAPLCPVRK  240
QVQRCLEDMS ILITTYEGTH NHSLPIEATA MASTTSAAAS MLLSGSSTSS QTSKNLPNIS  300
KTTPLYLSNS SSNPFPTITL DFTTFPTTSS FTSFNFPSNF QSGLGFLSNS LSFSSTESTT  360
MPKILGSGGL NYDSTSTLPY HNNLINIGSS QKQFDTSSNK LKEDSSQQAL TETLTKAITS  420
DPSFQSVLAA AISSMVGATK S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-22191265174WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065293.10.0probable WRKY transcription factor 72
TrEMBLA0A3Q7F0870.0A0A3Q7F087_SOLLC; Uncharacterized protein
STRINGSolyc02g067430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA128051921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-59WRKY DNA-binding protein 72