PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g016550.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 271aa MW: 30991.3 Da PI: 5.6571

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g016550.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.8	7.8e-18	74	127	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa+ k Sopen02g016550.1 74 KKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCK 127 456899**********************************************99 PP
2	HD-ZIP_I/II	129.4	1.5e-41	73	164	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lgl+prq+a+WFqnrRAR ktkqlEkdye Lkr++d+lk++n++L++++++L++el+ Sopen02g016550.1 73 EKKRRLNMEQVKALERSFEIGNKLEPERKMQLARALGLKPRQIAIWFQNRRARCKTKQLEKDYEILKRQCDKLKSDNDALKTQNKNLHSELQ 164 69***************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.03E-18	70	131	IPR009057	Homeodomain-like
SMART	SM00389	1.9E-18	72	133	IPR001356	Homeobox domain
PROSITE profile	PS50071	16.163	73	129	IPR001356	Homeobox domain
Pfam	PF00046	4.6E-15	74	127	IPR001356	Homeobox domain
CDD	cd00086	1.31E-15	74	130	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-19	76	136	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	109	125	IPR000047	Helix-turn-helix motif
Pfam	PF02183	6.7E-15	129	167	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence Send to blast
MLFSSSTGTM GFVPGAPEDN ELPPSFPSVY PHQEFQGISS VLMRRAMSFD HQDSRADDID 60 MSDDDGSSQL LGEKKRRLNM EQVKALERSF EIGNKLEPER KMQLARALGL KPRQIAIWFQ 120 NRRARCKTKQ LEKDYEILKR QCDKLKSDND ALKTQNKNLH SELQLLSLRN RESTGGGTPI 180 LFNLNKENEG SNWNNGSGDE NSTIIDVNLG RTSSTNSPHN NNNDHVFQTP NFKIEEQTQS 240 HDVPEEGFCN IFTNVEDQTN YWPLPVQQHF Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RRARCKTKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015065401.1	0.0	homeobox-leucine zipper protein HAT7-like
TrEMBL	A0A3Q7FLH4	0.0	A0A3Q7FLH4_SOLLC; Uncharacterized protein
STRING	Solyc02g067410.1.1	1e-180	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA848	24	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15150.1	1e-50	homeobox 3