PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016210.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 299aa    MW: 34117.9 Da    PI: 4.5633
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-191262155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Sopen02g016210.1 12 KKFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDQAACLLRG 62
                      589*******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.62E-321269No hitNo description
PfamPF008474.7E-141362IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-281370IPR001471AP2/ERF domain
PROSITE profilePS5103219.6251370IPR001471AP2/ERF domain
SMARTSM003803.4E-361376IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-201371IPR016177DNA-binding domain
PRINTSPR003673.6E-81425IPR001471AP2/ERF domain
PRINTSPR003673.6E-83652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MARKRKAEGL MKKFVGVRQR PSGRWVAEIK DTIQKIRVWL GTFDTAEEAA RAYDQAACLL  60
RGPNTRTNFW TSSSPFSNSA LPPKIIELLL SRIRERNNSV AAAAADDDSS SSTTSLAEID  120
YHQQKQQEKI GNRVDDFSDL LYTDYLYYPE DNVTENNVIA NVSAITRELT SIVQNQEFNF  180
QPVNNYEIIE IGEAINTDVE DIESDIDFQF FFSPFDLAEE LSMDFGEETS IVSEAMRRMN  240
YERKFSASLY AFNGITECLK LKMKSGGITR SDQLSRLQNA CKRNLDKERE NEERNSGND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1513691471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064781.10.0ethylene-responsive transcription factor ERN1-like
TrEMBLA0A3Q7F0161e-175A0A3Q7F016_SOLLC; Uncharacterized protein
STRINGSolyc02g067020.1.11e-176(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43102037
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-24related to AP2 11