PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen02g016040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 229aa MW: 25870.1 Da PI: 9.3328 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 102.2 | 8.8e-32 | 43 | 165 | 2 | 89 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak+ i+el+ + Sopen02g016040.1 43 FGGKDRHSKVLTVKGLRDRRVRLSVPTALQVYDLQDKLGLDQPSKVVDWLLNEAKHDIDELPPLqirdqtglpltglrkeeegtmvvsdedrv 135 689*************************************************************77777777777776666665555444333 PP TCP 66 .............ssssaseceaesssssasnsssg.............k 89 + s + k Sopen02g016040.1 136 kldarnldlkgnsN------------S--------NsnnnnnsfrfglyK 165 22222222211110............1........011111112232220 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.99 | 45 | 103 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.0E-30 | 45 | 156 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 229 aa Download sequence Send to blast |
MISREVDPSD NNVTMIPKKS SLSSSSSWRR FKDPRIVRVS RAFGGKDRHS KVLTVKGLRD 60 RRVRLSVPTA LQVYDLQDKL GLDQPSKVVD WLLNEAKHDI DELPPLQIRD QTGLPLTGLR 120 KEEEGTMVVS DEDRVKLDAR NLDLKGNSNS NSNNNNNSFR FGLYKDNHSS QSVHTDSHHG 180 VAVPHEQQEI QNLNVMAALP STIYNMPLSS QILVYPPAGL PQYFFHPHI |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 50 | 104 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015065471.1 | 1e-168 | transcription factor TCP13-like | ||||
TrEMBL | M1CIV8 | 1e-116 | M1CIV8_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400068332 | 1e-117 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02150.1 | 9e-42 | plastid transcription factor 1 |