PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015950.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MIKC_MADS
Protein Properties Length: 234aa    MW: 27413.3 Da    PI: 9.9163
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015950.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.24.4e-28959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krienk+ rqvtfskRr g+lKK +E+SvLCdaeva+i+fss+gkl+eys+
  Sopen02g015950.1  9 KRIENKISRQVTFSKRRSGLLKKTNEISVLCDAEVALIVFSSNGKLFEYST 59
                      79***********************************************96 PP
2K-box94.71.5e-31781717100
             K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +l+++  e+++ e+ kL +++e Lqr++Rh++GedL+  +l+e q LeqqL+++lk++RskKn+l++e+i++lqkkekelq++n  ++kkl+
  Sopen02g015950.1  78 MNLNTTYKENWTLEYPKLMARVELLQRNIRHFMGEDLDAFNLREFQGLEQQLDTALKRVRSKKNQLMHESISQLQKKEKELQQRNILISKKLK 170
                       34788899*********************************************************************************9998 PP

             K-box 100 e 100
                       e
  Sopen02g015950.1 171 E 171
                       6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.67161IPR002100Transcription factor, MADS-box
SMARTSM004324.8E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-32289IPR002100Transcription factor, MADS-box
CDDcd002652.13E-39275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.8E-2583169IPR002487Transcription factor, K-box
PROSITE profilePS5129715.46785175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGRCRVEMKR IENKISRQVT FSKRRSGLLK KTNEISVLCD AEVALIVFSS NGKLFEYSTQ  60
SSMENILERY ENYSYEEMNL NTTYKENWTL EYPKLMARVE LLQRNIRHFM GEDLDAFNLR  120
EFQGLEQQLD TALKRVRSKK NQLMHESISQ LQKKEKELQQ RNILISKKLK ENEKKQIVQT  180
NPGQSSTMTF LLQSPTVTNQ TIGGPSQATD QSQNRDGYNT LMPPWMFHHV HNKG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-19174173MEF2 CHIMERA
6byy_B3e-19174173MEF2 CHIMERA
6byy_C3e-19174173MEF2 CHIMERA
6byy_D3e-19174173MEF2 CHIMERA
6bz1_A3e-19174173MEF2 CHIMERA
6bz1_B3e-19174173MEF2 CHIMERA
6bz1_C3e-19174173MEF2 CHIMERA
6bz1_D3e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754413e-98HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063680.11e-175truncated transcription factor CAULIFLOWER A-like
RefseqXP_027770774.11e-175truncated transcription factor CAULIFLOWER A-like
SwissprotD7SMN63e-90FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLA0A3Q7EZR51e-168A0A3Q7EZR5_SOLLC; Uncharacterized protein
STRINGSolyc02g065730.1.11e-169(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4992397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.15e-76AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]