PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g015800.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

TCP

Protein Properties

Length: 318aa MW: 35626.6 Da PI: 5.613

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g015800.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	73.7	5.7e-23	1	130	24	105
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............................ 88 ++a+caa +F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++ s+s+ + Sopen02g015800.2 1 MPALCAAHVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTCTLPATQVTTTSENIPLSQSQPSvlapltratpvsgfpvgggffsmtpqsq 93 9*****************************************999997774444443333222224566666667777777777777777777 PP TCP 89 ...................kaaksaa.kskksqksaa 105 ++++++a ++ ++++ Sopen02g015800.2 94 pncrldlcqpslefsgnayRHMPFTAlLLQPVTADDG 130 7777777777777777777666666533333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	19.506	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.3E-18	1	130	IPR005333	Transcription factor, TCP
SuperFamily	SSF54495	9.18E-18	206	277	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
Gene3D	G3DSA:3.10.110.10	1.5E-15	208	277	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
Pfam	PF00179	1.0E-12	214	276	IPR000608	Ubiquitin-conjugating enzyme E2
PROSITE profile	PS50127	11.487	221	318	IPR000608	Ubiquitin-conjugating enzyme E2

Sequence ? help Back to Top
Protein Sequence Length: 318 aa Download sequence Send to blast
MPALCAAHVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTCTLPATQV TTTSENIPLS 60 QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL 120 LLQPVTADDG EEKVAEEDEK QPPTARMRKS TEADRVREAH RKVMVTNHRD EGHNYYLASK 180 RESGRNFLVK LTICSYYNQG FSYSEDISEL NLPETCSISF PNGKDDLMNF EVTIRPDEGY 240 YVGGTFVFSF IISSIYPPEA PKVKCKTKVY HPNIDLTHIA MGYFALKLNF LAQFEIDIFK 300 VFLNYCLDLL LMFSFTFA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2nvu_C	3e-23	204	276	32	103	NEDD8-conjugating enzyme Ubc12

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA248	24	201

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	2e-28	TCP family protein