PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015560.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 551aa    MW: 62387.1 Da    PI: 4.6924
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015560.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.81.3e-105643699
                      EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      + le ++g+ Wev++  ++++g+++l+kGW++F+    +  +  +vF+++ rs    vv ++++
  Sopen02g015560.1  5 VFLEAPHGKAWEVEV--ENSQGQIWLAKGWNDFCAYYSISIRSLLVFTYNPRSHS--VVAIYDQ 64
                      67999**********..*******************************9866666..7777765 PP
2B346.85.4e-152513321198
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++++rl++pk fa+++ ++  +   + le ++g++Wev+l  + + g+++l++GWk+F +   ++ g f++F ++ rs f  +v++f+
  Sopen02g015560.1 251 HELCRLRIPKGFASRYCKNILN--PVYLEVPNGEVWEVEL--EHSEGHIWLAEGWKDFSEYYSIRRGNFFMFGYNARSHF--NVTIFD 332
                       46799***********544334..5***************..999999**************************999999..998886 PP
3B355.21.3e-17453533488
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        + ps+v+k + l++p kfa+ + +   +s  l+l+ +   sW+vk+ + +k+ +   t GWk Fv +n+Lk gD++vF+++++ 
  Sopen02g015560.1 453 FMHPSYVSKPHALYIPLKFARMYLMR--NSGNLVLRVPGKGSWSVKCVMLRKDAK--VTCGWKAFVLDNKLKYGDVCVFEVINDA 533
                       5789*******************545..3447***************77777655..79*********************88763 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.505165IPR003340B3 DNA binding domain
CDDcd100173.22E-7563No hitNo description
PfamPF023621.3E-7563IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-10572IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.5E-10574IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.7E-20236332IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-19236334IPR015300DNA-binding pseudobarrel domain
CDDcd100173.33E-16241332No hitNo description
SMARTSM010193.6E-13243334IPR003340B3 DNA binding domain
PfamPF023622.6E-11251332IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012255334IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22442536IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22443535IPR015300DNA-binding pseudobarrel domain
CDDcd100172.92E-19448544No hitNo description
SMARTSM010191.4E-12449546IPR003340B3 DNA binding domain
PROSITE profilePS5086312.703450546IPR003340B3 DNA binding domain
PfamPF023622.1E-15452534IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MLNPVFLEAP HGKAWEVEVE NSQGQIWLAK GWNDFCAYYS ISIRSLLVFT YNPRSHSVVA  60
IYDQSKTEIE YPIDQEAESD EQEQDIPVLQ ANANVIEEED NPINLLANAN VNEEDIPVNL  120
QANANVIEQG IALRNRLVVP TGSHCFQAGA PRNSSSNNPK FIQIITSSDE LSRLAKQSTK  180
KSTEVEVIPN RNSEAAAGIG TTDTDTDVLS EESDDESKII MANKFRRQIG KVSSISNSSQ  240
PKFCKIIFSP HELCRLRIPK GFASRYCKNI LNPVYLEVPN GEVWEVELEH SEGHIWLAEG  300
WKDFSEYYSI RRGNFFMFGY NARSHFNVTI FDFSAAEIEY PPAEIESDDS IDISDVVEYP  360
SEYLSHDPLV QERKRIRQEG KEENDIPVEH QTIVIDEEES QLNVVSLVIS EDCEEQQSNI  420
VTSKRKEERD EGTADNYQRA KAFKSKNPFI VSFMHPSYVS KPHALYIPLK FARMYLMRNS  480
GNLVLRVPGK GSWSVKCVML RKDAKVTCGW KAFVLDNKLK YGDVCVFEVI NDAKLSLIDV  540
TIFPGISDGT K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-1443354328140B3 domain-containing transcription factor VRN1
4i1k_B8e-1443354328140B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064020.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLM0ZSN00.0M0ZSN0_SOLTU; Uncharacterized protein
STRINGSolyc02g065350.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.11e-16related to vernalization1 1