PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015460.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 324aa    MW: 37084.5 Da    PI: 7.2504
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.75.1e-14211306299
                       EEE-..-HHHHT..T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   2 fkvltpsdvlks..grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       f+ ++++++ ++  + l++  +fa+++ +++++s  ++l+     s  v++    ++ +  ++ GW  Fv +n+Lk+gD++vF++++ ++  +
  Sopen02g015460.1 211 FTSFMHPSYISRssNHLCIMLRFARTY-IPENCS-NIMLRVAGRGSLPVTY--YTGKAQAKIGIGWVAFVLDNQLKVGDVCVFEVIKGTQIFM 299
                       5555555555544688********999.344565.9***************..666667789**********************998755559 PP

                       EEEEE-S CS
                B3  93 vvkvfrk 99 
                       +v++fr+
  Sopen02g015460.1 300 NVTIFRA 306
                       9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.957167IPR003340B3 DNA binding domain
SMARTSM010190.79267IPR003340B3 DNA binding domain
SuperFamilySSF1019364.32E-11466IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-9465IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-7462No hitNo description
Gene3DG3DSA:2.40.330.101.8E-20203307IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-18204306IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-12209305No hitNo description
SMARTSM010197.4E-6210307IPR003340B3 DNA binding domain
PfamPF023624.9E-11211306IPR003340B3 DNA binding domain
PROSITE profilePS508638.431212307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLAKTALLKM DDGMSWEAKI VREASDYFIC EGDWRWFVVY NKLELGDMLI FYLVEKSTFH  60
VLHYSKKPRT NIRHFEELSS EDEVENVEEK DDEEENIEAS RKSKKVKTEP KESSGHCPLG  120
QSSKMKRQGD TEDDVSLDIH IKRMEIEKKL QGVASPPFTI VDHLTIDNEG CKMQSQQSSV  180
IYDVRKTVMD KEKAIAYQRA KANFKSKNPF FTSFMHPSYI SRSSNHLCIM LRFARTYIPE  240
NCSNIMLRVA GRGSLPVTYY TGKAQAKIGI GWVAFVLDNQ LKVGDVCVFE VIKGTQIFMN  300
VTIFRAAGSM PMQETDGQIV VSFH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065637.20.0B3 domain-containing protein Os11g0197600-like
TrEMBLK4B6W51e-133K4B6W5_SOLLC; Uncharacterized protein
TrEMBLM1B0581e-133M1B058_SOLTU; Uncharacterized protein
STRINGSolyc02g065310.1.11e-134(Solanum lycopersicum)
STRINGPGSC0003DMT4000341121e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-14related to vernalization1 1