PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g014600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SBP | ||||||||
Protein Properties | Length: 203aa MW: 22940.5 Da PI: 9.9524 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 49 | 1.7e-15 | 101 | 131 | 48 | 78 |
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+ fDe+krsCrrrLa+hn+rrrk+++ Sopen02g014600.2 101 RFHVLEAFDEGKRSCRRRLAGHNKRRRKTHP 131 9***************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47616 | 2.81E-11 | 3 | 72 | IPR010987 | Glutathione S-transferase, C-terminal-like |
Gene3D | G3DSA:1.20.1050.10 | 9.7E-14 | 3 | 74 | IPR010987 | Glutathione S-transferase, C-terminal-like |
PROSITE profile | PS51141 | 11.195 | 30 | 129 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-4 | 100 | 116 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.67E-12 | 101 | 134 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.0E-8 | 101 | 128 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MKSKDSSDCT KQALFDELKA LEEHLKAHGP YVNGQNVCSV DMSLAPKMYH LEVALGHFKK 60 WSVTESLSHL DPFLLPVVQG SILVIHEQII QLKGYKVSLF RFHVLEAFDE GKRSCRRRLA 120 GHNKRRRKTH PENVANGASV NDEGGSNYLL ISLLRILANV QFNSSDQTKD QKFCLILQQK 180 SMRKKRKIEL LAKSPDGTTD GVL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mye_A | 5e-26 | 1 | 70 | 110 | 179 | Dehydroascorbate reductase family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 129 | KRRRKTH |
2 | 178 | 186 | QKSMRKKRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-98 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3Q7G5S7 | 1e-73 | A0A3Q7G5S7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g064470.1.1 | 2e-74 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15809 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60030.1 | 2e-29 | squamosa promoter-binding protein-like 12 |