PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g013990.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 331aa MW: 35667.3 Da PI: 5.7316

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g013990.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	75.2	8.5e-24	232	294	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ Lk+el + ++e++kl+se+ Sopen02g013990.1 232 ERELKRQKRKQSNRESARRSRLRKQAECEELQHKVETLSNENHGLKEELRKVSEECEKLTSEN 294 89***********************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	3.8E-31	1	92	IPR012900	G-box binding protein, multifunctional mosaic region
Gene3D	G3DSA:1.20.5.170	3.9E-19	227	291	No hit	No description
Pfam	PF00170	1.1E-21	232	294	IPR004827	Basic-leucine zipper domain
SMART	SM00338	1.3E-22	232	296	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.955	234	297	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.67E-12	235	291	No hit	No description
CDD	cd14702	6.51E-24	237	287	No hit	No description
PROSITE pattern	PS00036	0	239	254	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGAGEESTPA KPSKVTSTQE TQATPSYPDW SSMQAYYGAG ATPPFFPSTV ASPTPHPYMW 60 GGQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQA NPESDSKAPD GKDQNTSKKL 120 KGCSGGKAGE SGKAASGSGN DGGATRSAES GSEGSSDEND ENDNHEFSAD KNRSFDLMLA 180 NGNPVAMPAP NLNIGMDLWN APSGGPGMIK MRSNQSGVSP APGMGREWIQ DERELKRQKR 240 KQSNRESARR SRLRKQAECE ELQHKVETLS NENHGLKEEL RKVSEECEKL TSENNSIKDE 300 LTRLYGPEAV SKLESNANAM RLQSNVEEAK S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	254	RRSRLRK
2	248	255	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT013873	0.0	BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015066328.1	0.0	G-box-binding factor 1-like isoform X2
Swissprot	P42774	1e-104	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A3Q7EYS3	0.0	A0A3Q7EYS3_SOLLC; Uncharacterized protein
STRING	Solyc02g062950.2.1	0.0	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	1e-73	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]