PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013380.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 263aa    MW: 29177.6 Da    PI: 6.3627
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013380.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.77.9e-19187221135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+Cg+ kTplWR gp g+ktLCnaCG+++++ +l
  Sopen02g013380.1 187 CSHCGVQKTPLWRTGPLGEKTLCNACGVRFKSGRL 221
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-721260IPR016679Transcription factor, GATA, plant
SMARTSM004013.4E-15181231IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.308184217IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.3E-15185219IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.85E-14186244No hitNo description
CDDcd002023.28E-15186236No hitNo description
PROSITE patternPS003440187212IPR000679Zinc finger, GATA-type
PfamPF003201.6E-16187221IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDYSGNCQSF VSGDDLFVDD LLDLSNGFSE DEQNENENEN NKSSSSQQIK ECDKETVIIP  60
SVKQDFGSLL GCEISLPGAD LDNLEWLSHF VEDSFSEYSL TYSAGNLPEK SLKVHSNVEI  120
PVREKPCFTV PFGAEREKNK PPSMSFSSSS STTANNFWGE LSVENKPAAR KPKKKMEKRI  180
GIGAKQCSHC GVQKTPLWRT GPLGEKTLCN ACGVRFKSGR LLPEYRPASS PTFSTGLHSN  240
SHRKVLEMRR KKETEPGPPV QSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065182.10.0GATA transcription factor 5-like
SwissprotQ9FH573e-51GATA5_ARATH; GATA transcription factor 5
TrEMBLM1AVJ61e-161M1AVJ6_SOLTU; GATA transcription factor
STRINGPGSC0003DMT4000313561e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-52GATA transcription factor 5