PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g012300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 481aa    MW: 54714.2 Da    PI: 8.555
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g012300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM24.29.1e-084411452128
               NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +++++ y F+  +kk++ gk  +ra++ g+Wk+ g+ +++ +++g+++g+ k   + +       +  W+m+ey+l
  Sopen02g012300.1  44 GTNNTDHYVFTLLQKKKEDGKYFSRAIAGGVWKEYGTAESLEDSEGSQIGIMKKYRLVE------DNYVWTMKEYSL 114
                       4466789*******************************************999988872......3468******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100512.2331142IPR003441NAC domain
PfamPF023653.2E-418114IPR003441NAC domain
SuperFamilySSF1019412.09E-1044142IPR003441NAC domain
PROSITE profilePS5010311.451437465IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MAANFTNKQL MEFLIKSFTF VPYEDQGFGL VDLYGKEKVS QILGTNNTDH YVFTLLQKKK  60
EDGKYFSRAI AGGVWKEYGT AESLEDSEGS QIGIMKKYRL VEDNYVWTMK EYSLTESKRN  120
ELKQKYEYTA HGEFVMCHIR MKANFPVKHY RKEDCPSEVG SISQQQTHQS INRSSFERRD  180
CLKKSEERLS SKSLAIWKCP PKFHLNEKWL VVAGEESQEA NKQEYRKRRV IEAVFPNNFA  240
IPPNPYNLCD LEKGYDDSQT PGVRTISTEE EEPTHDLTIL VAKAVAALQE QGSLIDANLL  300
VRLLLNLMNE RGMATNVVSL NDAHAGSAKS VPLTMTKPDI RENKSITYST SELDLENIKK  360
LISKYGVPYN AGGEISDLVS RYCPTTLHPK LTLSPNVGPS SSMTSHKDIN KYCNSLIKQR  420
GEKTESMVDE SLQKPIPCSL TPCIFFNKPK GCRKGFSCHF RHDIFGKKRS GRTSEGRDQR  480
D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019067278.10.0zinc finger CCCH domain-containing protein 6-like
RefseqXP_025884876.10.0zinc finger CCCH domain-containing protein 6-like
TrEMBLA0A494G8Q20.0A0A494G8Q2_SOLLC; Uncharacterized protein
STRINGSolyc00g012540.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.22e-07HB-other family protein