PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g011920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 835aa MW: 93507.9 Da PI: 6.3419 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.6e-23 | 121 | 222 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ + + ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + Sopen02g011920.1 121 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQT--PPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 209 99*****************************7444..44459************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ Sopen02g011920.1 210 NEKNQLLLGIRRA 222 889999***9986 PP | |||||||
2 | Auxin_resp | 115.8 | 3.7e-38 | 247 | 330 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k Sopen02g011920.1 247 AAHAAATNSCFNVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 330 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.79E-49 | 105 | 250 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.8E-41 | 114 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.54E-21 | 120 | 221 | No hit | No description |
PROSITE profile | PS50863 | 12.055 | 121 | 223 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-23 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-21 | 121 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 247 | 330 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.05E-6 | 707 | 783 | No hit | No description |
PROSITE profile | PS51745 | 20.781 | 709 | 793 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 835 aa Download sequence Send to blast |
MGQQAHEGGE KKCLNSELWH ACAGPLVCLP TVGSRVVYFP QGHSEQVAAT TNKEVDAHIP 60 NYPNLSPQLI CQLHNVTMHA DVETDEVYAQ MTLQPLTPEE QKDTYLPVEF GIPSKQPTNY 120 FCKTLTASDT STHGGFSVPR RAAEKVFPPL DFSQTPPAQE LIARDLHDVE WKFRHIFRGQ 180 PKRHLLTTGW SVFVSAKRLV AGDSVLFIWN EKNQLLLGIR RAVRPQTVMP SSVLSSDSMH 240 IGLLAAAAHA AATNSCFNVF FNPRASPSEF VIPLSKYIKA VYHTRVSVGM RFRMLFETEE 300 SSVRRYMGTI TGIGDLDPVR WANSHWRSVK VGWDESTAGE RQPRVSLWEI EPLTTFPMYP 360 SLFPLRLKRP FYPGTSSYQD SNNEAINRMA WLRGNAGELG HHSMNLQSFG MLPWMQQRVD 420 STILPNDINQ HYQAMLATGL QSFGSGDLLK QQLMQFQQPV QYLQHASTEN SILHQQQQQQ 480 QQIMQQAVHQ HMLPAQTQML SENLQRQSQH QSNNQSEEQA HQHTYQEAFQ LPHDQLQQRQ 540 PSNVTTPFLK ADFADLTSKF SASVAPSGVQ NMLGSLCSEG SSNSLNINRT GQSVIIEQSP 600 QQSWMSKFTE SQLNTCSNSS PLPTYGKDTS NPRGNCSLDS QNQALFGANV DSSGHLLPTT 660 VSNVTTTCAD MSLMPLGASG YQNSLYGYVQ DSSELLHNAG QIDPPNATHT FVKVYKSGCV 720 GRSLDITQFH SYHELRRELG QMFGIEGFLE DPQRSGWQLV FVDRENDILL LGDDPWEAFV 780 NNVWYIKILS PEDVQKLGKE EAESLNRGAV ERMSSTNADD RDLISGMPSL GSLEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 8 | 351 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF667342 | 0.0 | EF667342.1 Solanum lycopersicum auxin response factor 8 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064976.1 | 0.0 | auxin response factor 8-like isoform X1 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A3Q7EY57 | 0.0 | A0A3Q7EY57_SOLLC; Auxin response factor | ||||
STRING | Solyc02g037530.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |