PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g010270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 131aa MW: 15142.4 Da PI: 5.7848 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.7 | 1.1e-11 | 2 | 46 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k ie+++ r v+fskR+++++ A+ + ++a+va+++fs+ gk Sopen02g010270.1 2 KLIESERARAVSFSKRKKTLFEDAKKFATQTGADVALMLFSPGGK 46 569***************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.07E-16 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 14.339 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.7E-9 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-16 | 4 | 49 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MKLIESERAR AVSFSKRKKT LFEDAKKFAT QTGADVALML FSPGGKPYSC GSTSVEDIIE 60 NFLKMKVEEP RRHYVEGELK EIPQDKHMEE QKLALKLRVE NIKKETLNSI LKEHLKFDLN 120 VAPEPEDEEE Y |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-132 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769967.1 | 2e-91 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | M1DHK1 | 3e-62 | M1DHK1_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400089159 | 6e-63 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1780 | 12 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 9e-14 | AGAMOUS-like 29 |