PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen02g009420.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LSD

Protein Properties

Length: 420aa MW: 46353.6 Da PI: 8.5656

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen02g009420.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	32.7	1.2e-10	17	39	1	23
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gCrt+L YPrGA++V+C +C+ Sopen02g009420.2 17 CSGCRTILLYPRGATNVCCVVCN 39 **********************8 PP
2	zf-LSD1	35.1	2.1e-11	56	80	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+ PrGA+sVRCa+C+ V Sopen02g009420.2 56 CGCCRTLLMHPRGATSVRCACCHIV 80 9**********************98 PP
3	zf-LSD1	33.3	7.7e-11	105	128	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+ rt+L+YP GApsV+Ca+C+ Sopen02g009420.2 105 CGNSRTMLMYPCGAPSVKCAICHY 128 8888******************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	9.3E-10	15	42	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-9	17	39	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	2.5E-13	53	83	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	56	80	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.3E-11	102	132	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	9.4E-10	105	129	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence Send to blast
MFENQFLVKD WYEYLVCSGC RTILLYPRGA TNVCCVVCNN LTPVPPPGME MAQLICGCCR 60 TLLMHPRGAT SVRCACCHIV NLVPVSKAYL RSTAKSPNHF AHVNCGNSRT MLMYPCGAPS 120 VKCAICHYIA HVNGIGEQCG GWIEAEEETQ LKNHLRWARI RVKGSLKEIP AYVETGYELG 180 GKSSIFQVKK VANIQILASI LQCKIENLPT TYLGMPLGNN HKELVIWDGI IEKTEKRLAN 240 WKANYLSLGG RVTLINSVLD VLPTYVMSLF PLPAKVEERL DKLRRNLNDW EVDRIVELLL 300 KLGEFTGLTT EADGIRWKHD SDGKFSVRKP YRREVMTHSG GIHGPWKQIW EGNTPTKAVD 360 GRTPVPVQTS NSGATSSAGP TSSTATGHSQ NQTVVVQNPM SLDESGKLVS NVVVGVTTTT

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence Send to blast

MFENQFLVKD WYEYLVCSGC RTILLYPRGA TNVCCVVCNN LTPVPPPGME MAQLICGCCR  60
TLLMHPRGAT SVRCACCHIV NLVPVSKAYL RSTAKSPNHF AHVNCGNSRT MLMYPCGAPS  120
VKCAICHYIA HVNGIGEQCG GWIEAEEETQ LKNHLRWARI RVKGSLKEIP AYVETGYELG  180
GKSSIFQVKK VANIQILASI LQCKIENLPT TYLGMPLGNN HKELVIWDGI IEKTEKRLAN  240
WKANYLSLGG RVTLINSVLD VLPTYVMSLF PLPAKVEERL DKLRRNLNDW EVDRIVELLL  300
KLGEFTGLTT EADGIRWKHD SDGKFSVRKP YRREVMTHSG GIHGPWKQIW EGNTPTKAVD  360
GRTPVPVQTS NSGATSSAGP TSSTATGHSQ NQTVVVQNPM SLDESGKLVS NVVVGVTTTT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1679	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	2e-43	lsd one like 1