PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g009420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LSD | ||||||||
Protein Properties | Length: 196aa MW: 20867.2 Da PI: 8.285 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 34.1 | 4.6e-11 | 17 | 39 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gCrt+L YPrGA++V+C +C+ Sopen02g009420.1 17 CSGCRTILLYPRGATNVCCVVCN 39 **********************8 PP | |||||||
2 | zf-LSD1 | 36.5 | 7.8e-12 | 56 | 80 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg CrtlL+ PrGA+sVRCa+C+ V Sopen02g009420.1 56 CGCCRTLLMHPRGATSVRCACCHIV 80 9**********************98 PP | |||||||
3 | zf-LSD1 | 34.7 | 2.9e-11 | 105 | 128 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+ rt+L+YP GApsV+Ca+C+ Sopen02g009420.1 105 CGNSRTMLMYPCGAPSVKCAICHY 128 8888******************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.3E-10 | 15 | 42 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.6E-10 | 17 | 39 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 8.6E-14 | 53 | 83 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.8E-11 | 56 | 80 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.5E-11 | 102 | 132 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-10 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MFENQFLVKD WYEYLVCSGC RTILLYPRGA TNVCCVVCNN LTPVPPPGME MAQLICGCCR 60 TLLMHPRGAT SVRCACCHIV NLVPVSKAYL RSTAKSPNHF AHVNCGNSRT MLMYPCGAPS 120 VKCAICHYIA HVNAVDGRTP VPVQTSNSGA TSSAGPTSST ATGHSQNQTV VVQNPMSLDE 180 SGKLVSNVVV GVTTTT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 2e-58 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064658.1 | 1e-117 | protein LSD1-like | ||||
Swissprot | Q6ASS2 | 4e-57 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A1S4DBD8 | 4e-95 | A0A1S4DBD8_TOBAC; protein LOL2-like | ||||
TrEMBL | A0A1U7WYC9 | 4e-95 | A0A1U7WYC9_NICSY; protein LOL2-like isoform X1 | ||||
STRING | XP_009783613.1 | 6e-96 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 6e-49 | LSD family protein |
Publications ? help Back to Top | |||
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