PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen02g006800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 849aa MW: 92975.9 Da PI: 5.7454 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3e-17 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ +r++L ++ +++ +q+kvWFqNrR +ek+ Sopen02g006800.1 20 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRESpilsNIEPKQIKVWFQNRRCREKQ 78 5679******************************9999*******************97 PP | |||||||
2 | START | 169.5 | 2.2e-53 | 168 | 375 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e++ ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ +l vi +g g+++ Sopen02g006800.1 168 IAEETLAEFLGKATGTAVDWVQLIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGngGTIE 259 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++ +++a+++l+ Rdf+++Ry+ +l++g++vi+++S++ + p+ s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++l Sopen02g006800.1 260 LIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVL 352 ******************************************999998999****************************************** PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s+ + ++kt++a+l++ + Sopen02g006800.1 353 RPLYESSKILAQKTTMAALRHIR 375 *******************9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-18 | 10 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.532 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-14 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-15 | 19 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.81E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 9.1E-15 | 21 | 78 | IPR001356 | Homeobox domain |
CDD | cd14686 | 2.39E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 26 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 4.98E-71 | 162 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 5.0E-23 | 166 | 372 | IPR023393 | START-like domain |
SMART | SM00234 | 6.8E-51 | 167 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.37E-37 | 168 | 379 | No hit | No description |
Pfam | PF01852 | 6.4E-51 | 168 | 375 | IPR002913 | START domain |
Pfam | PF08670 | 7.9E-47 | 704 | 848 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MALCLQRGES GSKNDMDNGK YVRYTPEQVE ALERVYAECP KPTSLRRQQL IRESPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SQLVYENGYM 120 KQQINTVSST TTDTSCESVV VSGQQQRKNP TPQHPERDAN NPAGLLAIAE ETLAEFLGKA 180 TGTAVDWVQL IGMKPGPDSI GIVAVSRNCS GVAARACGLV SLEPTKVAEI LKDRPSWYRD 240 CRCLNVLSVI PTGNGGTIEL IYLQTYAPTT LATARDFWTL RYTTSLEDGS LVICERSLTT 300 ATGGPTGPPA TSFVRAEMLP SGYLIRPCEG GGSMIHIVDH IDLDAWSVPE VLRPLYESSK 360 ILAQKTTMAA LRHIRQIAQE TSGEIQYSGG RQPAVLRALS QRLCRGFNDA VNGFVDDGWT 420 IMDSDGVEDV TIAINSSSSK FLGSQYNTLS ILPTFGGVLC ARASMLLQNV PPALLVRFLR 480 EHRSEWADYG VDAYSSASLK ASPYAVPCAR PGGFPSSQVI LPLAQTVEHE EFLEVVRLEG 540 PAFSPEDIAL SRDMYLLQLC SGVDENAAGA CAQLVFAPID ESFGDDAPLL PSGFRVIPLE 600 PKSDVPAATR TLDLASTLEA GTGGSGTRPA GEIEAGNYNH RSVLTISFQF TFESHYQDNV 660 AAMARQYVRS IVGSVQRVAM AIAPSRLSSQ LTPKSFPVSP EAVTLARWIS RSYRVNTGGD 720 LFQVDSQAGD AVLKQLWHHS DAIMCCSVKM NASAVFTFAN QAGLDMLETT LLALQDIMLD 780 KILDEAGRKV LLSEFSKIMQ QGFAYLPAGI CVSSMGRPIS YEQAIAWKVL NDDDSNHCLA 840 FMFINWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY560320 | 0.0 | AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds. | |||
GenBank | JQ686932 | 0.0 | JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015066689.1 | 0.0 | homeobox-leucine zipper protein ATHB-14-like | ||||
Swissprot | A2XK30 | 0.0 | HOX32_ORYSI; Homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A3Q7EW76 | 0.0 | A0A3Q7EW76_SOLLC; Uncharacterized protein | ||||
STRING | Solyc02g024070.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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