PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g006800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HD-ZIP
Protein Properties Length: 849aa    MW: 92975.9 Da    PI: 5.7454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g006800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93e-172078357
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      k  ++t+eq+e+Le++++++++p+  +r++L ++     +++ +q+kvWFqNrR +ek+
  Sopen02g006800.1 20 KYVRYTPEQVEALERVYAECPKPTSLRRQQLIRESpilsNIEPKQIKVWFQNRRCREKQ 78
                      5679******************************9999*******************97 PP
2START169.52.2e-531683752204
                       HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS
             START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 
                       +aee+++e++ ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++   +l vi +g  g+++
  Sopen02g006800.1 168 IAEETLAEFLGKATGTAVDWVQLIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCLNVLSVIPTGngGTIE 259
                       68999*****************************************************.8888888888************************ PP

                       EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS
             START  93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181
                       l++ +++a+++l+  Rdf+++Ry+ +l++g++vi+++S++  +  p+     s+vRae+lpSg+li+p+++g+s +++v+h+dl++++++++l
  Sopen02g006800.1 260 LIYLQTYAPTTLATaRDFWTLRYTTSLEDGSLVICERSLTTATGGPTgppATSFVRAEMLPSGYLIRPCEGGGSMIHIVDHIDLDAWSVPEVL 352
                       ******************************************999998999****************************************** PP

                       HHHHHHHHHHHHHHHHHHTXXXX CS
             START 182 rslvksglaegaktwvatlqrqc 204
                       r+l++s+ + ++kt++a+l++ +
  Sopen02g006800.1 353 RPLYESSKILAQKTTMAALRHIR 375
                       *******************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-181078IPR009057Homeodomain-like
PROSITE profilePS5007115.5321579IPR001356Homeobox domain
SMARTSM003891.2E-141783IPR001356Homeobox domain
SuperFamilySSF466891.24E-151982IPR009057Homeodomain-like
CDDcd000866.81E-162080No hitNo description
PfamPF000469.1E-152178IPR001356Homeobox domain
CDDcd146862.39E-672111No hitNo description
PROSITE profilePS5084826158386IPR002913START domain
CDDcd088754.98E-71162378No hitNo description
Gene3DG3DSA:3.30.530.205.0E-23166372IPR023393START-like domain
SMARTSM002346.8E-51167377IPR002913START domain
SuperFamilySSF559611.37E-37168379No hitNo description
PfamPF018526.4E-51168375IPR002913START domain
PfamPF086707.9E-47704848IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 849 aa     Download sequence    Send to blast
MALCLQRGES GSKNDMDNGK YVRYTPEQVE ALERVYAECP KPTSLRRQQL IRESPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SQLVYENGYM  120
KQQINTVSST TTDTSCESVV VSGQQQRKNP TPQHPERDAN NPAGLLAIAE ETLAEFLGKA  180
TGTAVDWVQL IGMKPGPDSI GIVAVSRNCS GVAARACGLV SLEPTKVAEI LKDRPSWYRD  240
CRCLNVLSVI PTGNGGTIEL IYLQTYAPTT LATARDFWTL RYTTSLEDGS LVICERSLTT  300
ATGGPTGPPA TSFVRAEMLP SGYLIRPCEG GGSMIHIVDH IDLDAWSVPE VLRPLYESSK  360
ILAQKTTMAA LRHIRQIAQE TSGEIQYSGG RQPAVLRALS QRLCRGFNDA VNGFVDDGWT  420
IMDSDGVEDV TIAINSSSSK FLGSQYNTLS ILPTFGGVLC ARASMLLQNV PPALLVRFLR  480
EHRSEWADYG VDAYSSASLK ASPYAVPCAR PGGFPSSQVI LPLAQTVEHE EFLEVVRLEG  540
PAFSPEDIAL SRDMYLLQLC SGVDENAAGA CAQLVFAPID ESFGDDAPLL PSGFRVIPLE  600
PKSDVPAATR TLDLASTLEA GTGGSGTRPA GEIEAGNYNH RSVLTISFQF TFESHYQDNV  660
AAMARQYVRS IVGSVQRVAM AIAPSRLSSQ LTPKSFPVSP EAVTLARWIS RSYRVNTGGD  720
LFQVDSQAGD AVLKQLWHHS DAIMCCSVKM NASAVFTFAN QAGLDMLETT LLALQDIMLD  780
KILDEAGRKV LLSEFSKIMQ QGFAYLPAGI CVSSMGRPIS YEQAIAWKVL NDDDSNHCLA  840
FMFINWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5603200.0AY560320.1 Nicotiana sylvestris PHAVOLUTA-like HD-ZIPIII protein mRNA, complete cds.
GenBankJQ6869320.0JQ686932.1 Nicotiana tabacum cultivar SR1 PHV HD-ZIPIII (PHV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066689.10.0homeobox-leucine zipper protein ATHB-14-like
SwissprotA2XK300.0HOX32_ORYSI; Homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A3Q7EW760.0A0A3Q7EW76_SOLLC; Uncharacterized protein
STRINGSolyc02g024070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]