PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g006270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 387aa    MW: 43358.5 Da    PI: 5.1598
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g006270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.8e-31179237259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Sopen02g006270.1 179 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 237
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787173239IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.1E-31175239IPR003657WRKY domain
SuperFamilySSF1182902.88E-26177239IPR003657WRKY domain
SMARTSM007741.4E-37178238IPR003657WRKY domain
PfamPF031067.6E-26180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MENNNYQGDL ADIFRGGNNN TTSGESSSTN NTIIPIPDGW TQFPYSATEE PTCVQDFGDP  60
FCNLRDPLFH DLDMLQATPT EDNNNNNNNN SVFGDSRKRG NNMFSRMLQI SPTNKLAMSV  120
QNHDAINSSK TCLIENSALQ ISSPRNTGIK RRKSQAKKVV CIPAAAPANS RQGGEVVPSD  180
LWAWRKYGQK PIKGSPYPRG YYRCSSSKGC SARKQVERSR TDPNMLVITY TSEHNHPWPT  240
QRNALAGSTR SQPNNSKHTI IPNNPQSQTD TDDQQKDNAV SISKVKEEVA EEEAVHNHKL  300
VEMRDDEEFS KDSYQPIMLP DSSNQCHEDF FADLVELEAD PLNLLFAKTL SGDINDSRPK  360
EDIESFNMYD WSKDGNTSNN NNKPDTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B9e-26154240380Disease resistance protein RRS1
5w3x_D9e-26154240380Disease resistance protein RRS1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065165.10.0probable WRKY transcription factor 14
TrEMBLA0A3Q7EWG20.0A0A3Q7EWG2_SOLLC; Uncharacterized protein
STRINGSolyc02g021680.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.12e-79WRKY DNA-binding protein 35