PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g005730.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 885aa    MW: 99881.1 Da    PI: 10.4034
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g005730.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19188272495
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        + ps+v++s++l++p kfa+++ +++++   l+l+ +   sW+vk++   + g+   ++GWk Fv++n+Lk+gD++vF++ +   ++l+v 
  Sopen02g005730.2 188 FMQPSYVSASCNLSIPLKFARKYFLENNG--NLVLRVPGIGSWSVKCTLGMTNGK--VGSGWKAFVQDNKLKVGDVCVFEVLK---GQLFVD 272
                       5789*******************887656..6***************77555555..79*********************544...344454 PP
2B335.41.9e-11591680699
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                        ps+v++  +l +  ++a+++  + +++ +l+l+     sW+vk+      gr+ l   W+ Fv +n+Lk+gD++vF+l++  + f l v++f
  Sopen02g005730.2 591 QPSYVSRPYNLHMRFSYAQKYLWE-KCG-DLVLRAAGRGSWSVKYDLGLPEGRIRL--SWRAFVLDNKLKSGDVCVFELIKGtQPF-LDVTIF 678
                       567777777777777788888433.244.8***************66555555555..5*********************874666.999999 PP

                       -S CS
                B3  98 rk 99 
                       r+
  Sopen02g005730.2 679 RA 680
                       86 PP
3B351.51.8e-16788876695
                       ..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   6 tpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        ps+v+      +l++  + a+++ +   ++ +++le +s r+W+vk+  + + ++  +++GWkeFv +n+Lk+gD+++F+ +gr +  ++v 
  Sopen02g005730.2 788 QPSYVSLArgpIQLSIASSVARKFFST--RQSDVVLEVSSKRRWTVKC--SVGIKTAKFSTGWKEFVVDNKLKVGDVCIFEWTGRPNLVFNVI 876
                       334443335555789999999999755..4449***************..666667779**********************888766655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-23177279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20178278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.535185279IPR003340B3 DNA binding domain
SMARTSM010197.5E-18185279IPR003340B3 DNA binding domain
PfamPF023628.1E-17187271IPR003340B3 DNA binding domain
CDDcd100171.06E-18189277No hitNo description
Gene3DG3DSA:2.40.330.108.1E-7397455IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-5398455IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.83405496IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-17578681IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15581681IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014585681IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757586681IPR003340B3 DNA binding domain
PfamPF023623.0E-8590680IPR003340B3 DNA binding domain
CDDcd100172.06E-11590679No hitNo description
Gene3DG3DSA:2.40.330.109.7E-23775878IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18776879IPR015300DNA-binding pseudobarrel domain
CDDcd100171.48E-16781879No hitNo description
SMARTSM010191.6E-7783881IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857786881IPR003340B3 DNA binding domain
PfamPF023625.0E-14799874IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 885 aa     Download sequence    Send to blast
MASSSSTKNN TVVQSRFIKI ILFQHERIHL SIPHDFERRC CNDILSPVYL EVPTGQVWEV  60
ELRHSEEIEY PYSSRTFHFH ETHHAPIIDL SESDVDIMED TPRRQKLKEK VVDHSLENLC  120
DGQFSKRKRH GDDVASPSFT KKGQNCRIHK KDSKSVYDQN KTVMEKESST AYQQAKAFKS  180
KNPFTISFMQ PSYVSASCNL SIPLKFARKY FLENNGNLVL RVPGIGSWSV KCTLGMTNGK  240
VGSGWKAFVQ DNKLKVGDVC VFEVLKGQLF VDVIIFRAAG STLIHNIVAE VPRVSCSQPK  300
VVQTKKSKQH TGGSYGLNLK IKEEQGEGTE ILGHCPLGRG SKRKQPEVDA VVPSFTRNTK  360
KSGGSCGLHK KQSKIVYDKY KTVTDKKSSI AYQRAKAFKS KNPFIVSFMQ PSYISKHYIL  420
KIWSAFARKY FLENDGNLVL RVSGSGSWSV KCTITTAMIK GGQLFVDVTI FRAAGSIIVA  480
EVPGRSDRKS KVIKEEHGKG TEIEHSVKVL GHCPLGNDSK RRRPARKAED VASPSFTRKP  540
KKSGESCRMH KQQTKMVNAK RKTVLDKEMT IAYQRAKAFR SKNPFVIYFM QPSYVSRPYN  600
LHMRFSYAQK YLWEKCGDLV LRAAGRGSWS VKYDLGLPEG RIRLSWRAFV LDNKLKSGDV  660
CVFELIKGTQ PFLDVTIFRA DERKPKHTTD GGVSGFRNKI IKSDNSVPCP QTKIDHSRKH  720
NLEKKQKGDS DGLITSKVKE KLREDTLRHG QQSTSFCMGT VVAKEMVLAY QKAKAFTSEN  780
SFFLSFMQPS YVSLARGPIQ LSIASSVARK FFSTRQSDVV LEVSSKRRWT VKCSVGIKTA  840
KFSTGWKEFV VDNKLKVGDV CIFEWTGRPN LVFNVIIFPS CGDIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1415487818144B3 domain-containing transcription factor VRN1
4i1k_B2e-1415487818144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064478.10.0uncharacterized protein LOC107009644
TrEMBLA0A3Q7EVR00.0A0A3Q7EVR0_SOLLC; Uncharacterized protein
STRINGSolyc02g021260.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-18related to vernalization1 1