PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g005730.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 884aa    MW: 99752 Da    PI: 10.4204
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g005730.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.92.1e-19188272495
                       E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        + ps+v++s++l++p kfa+++ +++++   l+l+ +   sW+vk++   + g+   ++GWk Fv++n+Lk+gD++vF++ +   ++l+v 
  Sopen02g005730.1 188 FMQPSYVSASCNLSIPLKFARKYFLENNG--NLVLRVPGIGSWSVKCTLGMTNGK--VGSGWKAFVQDNKLKVGDVCVFEVLK---GQLFVD 272
                       5789*******************887656..6***************77555555..79*********************544...344454 PP
2B335.41.9e-11590679699
                       ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                        ps+v++  +l +  ++a+++  + +++ +l+l+     sW+vk+      gr+ l   W+ Fv +n+Lk+gD++vF+l++  + f l v++f
  Sopen02g005730.1 590 QPSYVSRPYNLHMRFSYAQKYLWE-KCG-DLVLRAAGRGSWSVKYDLGLPEGRIRL--SWRAFVLDNKLKSGDVCVFELIKGtQPF-LDVTIF 677
                       567777777777777788888433.244.8***************66555555555..5*********************874666.999999 PP

                       -S CS
                B3  98 rk 99 
                       r+
  Sopen02g005730.1 678 RA 679
                       86 PP
3B351.51.8e-16787875695
                       ..-HHHHT...T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3   6 tpsdvlks...grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        ps+v+      +l++  + a+++ +   ++ +++le +s r+W+vk+  + + ++  +++GWkeFv +n+Lk+gD+++F+ +gr +  ++v 
  Sopen02g005730.1 787 QPSYVSLArgpIQLSIASSVARKFFST--RQSDVVLEVSSKRRWTVKC--SVGIKTAKFSTGWKEFVVDNKLKVGDVCIFEWTGRPNLVFNVI 875
                       334443335555789999999999755..4449***************..666667779**********************888766655555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.2E-23177279IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-20178278IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.535185279IPR003340B3 DNA binding domain
SMARTSM010197.5E-18185279IPR003340B3 DNA binding domain
PfamPF023628.1E-17187271IPR003340B3 DNA binding domain
CDDcd100171.07E-18189277No hitNo description
Gene3DG3DSA:2.40.330.108.1E-7396454IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.92E-5397454IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.83404495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.9E-17577680IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-15580680IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0014584680IPR003340B3 DNA binding domain
PROSITE profilePS5086310.757585680IPR003340B3 DNA binding domain
PfamPF023623.0E-8589679IPR003340B3 DNA binding domain
CDDcd100172.09E-11589678No hitNo description
Gene3DG3DSA:2.40.330.109.7E-23774877IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-18775878IPR015300DNA-binding pseudobarrel domain
CDDcd100171.52E-16780878No hitNo description
SMARTSM010191.6E-7782880IPR003340B3 DNA binding domain
PROSITE profilePS5086311.857785880IPR003340B3 DNA binding domain
PfamPF023625.0E-14798873IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MASSSSTKNN TVVQSRFIKI ILFQHERIHL SIPHDFERRC CNDILSPVYL EVPTGQVWEV  60
ELRHSEEIEY PYSSRTFHFH ETHHAPIIDL SESDVDIMED TPRRQKLKEK VVDHSLENLC  120
DGQFSKRKRH GDDVASPSFT KKGQNCRIHK KDSKSVYDQN KTVMEKESST AYQQAKAFKS  180
KNPFTISFMQ PSYVSASCNL SIPLKFARKY FLENNGNLVL RVPGIGSWSV KCTLGMTNGK  240
VGSGWKAFVQ DNKLKVGDVC VFEVLKGQLF VDVIIFRAAG STLIHNIVAE VPRVSCSQPK  300
VVQTKKSKQH TGGSYGLNLK IKEQGEGTEI LGHCPLGRGS KRKQPEVDAV VPSFTRNTKK  360
SGGSCGLHKK QSKIVYDKYK TVTDKKSSIA YQRAKAFKSK NPFIVSFMQP SYISKHYILK  420
IWSAFARKYF LENDGNLVLR VSGSGSWSVK CTITTAMIKG GQLFVDVTIF RAAGSIIVAE  480
VPGRSDRKSK VIKEEHGKGT EIEHSVKVLG HCPLGNDSKR RRPARKAEDV ASPSFTRKPK  540
KSGESCRMHK QQTKMVNAKR KTVLDKEMTI AYQRAKAFRS KNPFVIYFMQ PSYVSRPYNL  600
HMRFSYAQKY LWEKCGDLVL RAAGRGSWSV KYDLGLPEGR IRLSWRAFVL DNKLKSGDVC  660
VFELIKGTQP FLDVTIFRAD ERKPKHTTDG GVSGFRNKII KSDNSVPCPQ TKIDHSRKHN  720
LEKKQKGDSD GLITSKVKEK LREDTLRHGQ QSTSFCMGTV VAKEMVLAYQ KAKAFTSENS  780
FFLSFMQPSY VSLARGPIQL SIASSVARKF FSTRQSDVVL EVSSKRRWTV KCSVGIKTAK  840
FSTGWKEFVV DNKLKVGDVC IFEWTGRPNL VFNVIIFPSC GDIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1415487718144B3 domain-containing transcription factor VRN1
4i1k_B2e-1415487718144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064478.10.0uncharacterized protein LOC107009644
TrEMBLA0A3Q7EVR00.0A0A3Q7EVR0_SOLLC; Uncharacterized protein
STRINGSolyc02g021260.1.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-18related to vernalization1 1