PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g001310.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 482aa    MW: 53715.8 Da    PI: 9.9404
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g001310.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57355.12.2e-1728116698
            DUF573   6 lwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                        ws+eDei++L+Gli+ k+++g +   d  ++y+ +k+s+  k ++   l +Ki+ L++K+k++ +k    +  + s +h+++ f ls  iWg
  Sopen02g001310.1  28 AWSKEDEITILKGLIKLKTEKG-KIRFDYVQLYDSIKQSLAHKsATPLHLQKKIKCLREKYKNNFNK----STRTWSIPHEEELFYLSDEIWG 115
                       4*********************.5577999**********8872556799*****************....7788999**************9 PP

            DUF573  98 s 98 
                       +
  Sopen02g001310.1 116 K 116
                       5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.3E-1628115IPR007592Protein of unknown function DUF573
SuperFamilySSF545341.53E-24339480No hitNo description
Gene3DG3DSA:3.10.50.406.3E-24358480No hitNo description
PfamPF002541.4E-16390478IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
PROSITE profilePS5005918.607394481IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006457Biological Processprotein folding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MQRRGKLMPG GGGGSEKMIK KKSEKVGAWS KEDEITILKG LIKLKTEKGK IRFDYVQLYD  60
SIKQSLAHKS ATPLHLQKKI KCLREKYKNN FNKSTRTWSI PHEEELFYLS DEIWGKDDHQ  120
QLKIPSSSLM NQQQLTIPSS SLMNQQHLTL PSSSLMNQQQ LTLPSSSLMN QQFTISDTTF  180
VGDLGLALTT MSRNQSNQMQ VALQQFELVS QSLSIRKSYA NQILHAHITL KEEGLSEQKI  240
ARSYFDTKIQ HAQLVSDAYN ASHSFGGSLV NIVSDCVLKE DATKVMNEGN CPPATIGCRK  300
PITGKPSGTS LKSVREMCHS QERKKKKKRK IENPEKHRDS SIQSQLEMEN QSAVAYAKNN  360
NESAKSSDIH TLSDGLTVEV MVKGKADGKV ASLGKQIKIH FIAKLRDTGC IVGSTIGAAP  420
HQFCLGYEKV LKGLNIGIEG MHVGEKRRLT IPPSLGPGRK AKPPIMPDSW LLYEVELVDI  480
CE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3uqa_A1e-1434648079209Ubiquitin-like protein SMT3, Peptidyl-prolyl cis-trans isomerase
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1321327ERKKKKK
2323329KKKKKRK
3324329KKKKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063590.10.0uncharacterized protein LOC107008897 isoform X1
TrEMBLA0A3Q7FFG30.0A0A3Q7FFG3_SOLLC; Peptidylprolyl isomerase
STRINGSolyc02g005290.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1376078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.12e-09DNA-binding storekeeper protein-related transcriptional regulator