PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen02g001180.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 146aa MW: 16703.4 Da PI: 10.7197 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 40.8 | 6e-13 | 30 | 113 | 5 | 92 |
DUF573 5 rlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlv.eKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 + w++eDei +L+Gli+ k+++g + s d ++ + +k+s+ k ++ ql +K++ L +K+k++ kk + + + +h+++ f ls Sopen02g001180.1 30 SAWTKEDEIKILKGLIKLKTEKG-KISLDYVQLNNSIKQSLAHKsATPLQLQkKKMKYLGEKYKNNLKK-----SRTPTIPHEEELFFLS 113 57*********************.55779999********9877255679972579***********99.....4445556666666665 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.3E-10 | 31 | 115 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 146 aa Download sequence Send to blast |
MLRRGKLMPA ATAGSEKMIK KNKATSEKVS AWTKEDEIKI LKGLIKLKTE KGKISLDYVQ 60 LNNSIKQSLA HKSATPLQLQ KKKMKYLGEK YKNNLKKSRT PTIPHEEELF FLSDKQGRSA 120 NHEPTTYNVF FQFGSSTTYN FFSGRI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 0.0 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015165521.1 | 1e-51 | PREDICTED: uncharacterized protein LOC102593685 isoform X3 | ||||
TrEMBL | M1B5N9 | 1e-51 | M1B5N9_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037664 | 2e-52 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13760 | 7 | 8 |