PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g054240.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Nin-like

Protein Properties

Length: 843aa MW: 93628.8 Da PI: 7.4808

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g054240.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.7	5.3e-29	544	594	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Sopen01g054240.1 544 EKSISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 594 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.427	533	614	IPR003035	RWP-RK domain
Pfam	PF02042	9.8E-25	547	594	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.19E-21	744	831	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.3E-20	747	828	No hit	No description
SMART	SM00666	5.6E-23	748	831	IPR000270	PB1 domain
PROSITE profile	PS51745	21.927	748	831	IPR000270	PB1 domain
Pfam	PF00564	2.2E-16	749	830	IPR000270	PB1 domain
CDD	cd06407	3.11E-40	749	830	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 843 aa Download sequence Send to blast
MEDAAFTLLA KLHDDNNASD FTEFGFWLEA TDQPSNSNSN SNYCTSNQMD SPPPTQSRRK 60 LWIGPNNPNP TTSIPPVNAR LVQAIEYLKN STTHNKEVLI QIWVPVNRGG KHVLITHNQP 120 YFLNPNSHSL LQYRNVSQNY QFAADKDSNE LVGLPGRVFL KKLPEWTPDV RFFKSEEYPR 180 VNYAHQHNVR GSIAVPVFEA GSGTCLGVVE IVTTIQKTHY HLELEHVCKA LEAVNLRSSG 240 ISSNPSKIKD QDCNESYLAA LAEIQYILTC VCDTHKLPLA QTWAPCIQQG KGGCLQSDEN 300 FASCVSTVDS SCYVRDQHVV PFHLACSEHH LLKGEGVAGG AFNTNQPCFA TDITAFSKAE 360 YPLSHHARMF GLCSAVAIRL RSIYTGSADF VLEFFLPLDC KNTEEQKIML SSLSSVIQQS 420 CRSLRVVTDQ ELQEEKEVVR LPIGEEESRK PVSSSYRDQD ASSWLSEMLD AQRKGKGAAA 480 VSENFKVTAT PWDYTQRESI HASTFSEPNQ NFEPKGGSFD FSSGTGSHSS GAKRAGERRR 540 SKTEKSISLQ VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK IKKVGHSLQK 600 LQLVIDSVHG AEGAIKLSSF YTNFPELNSP NNPGTSNFSA SKNDDHLQQV NTQPDGSPVT 660 TTSKSTSSSD SHNSSSSLFC SSGSKNCTTE ENPGGMPKRA HTETGLHDMG QEETKLLVRP 720 QSQKIQSNHN SVEPVCPWST SSNQVLGRFK VKAIFGKEKI RFSLQSHWGF RDVKHEVMRR 780 FNVEDVGKID LKYLDDDDEW VLLTCDADLE ECIDIHKFSK RRTIKVSLHH TNLGSSFGSS 840 GPA

Sequence ? help Back to Top

Protein Sequence Length: 843 aa Download sequence Send to blast

MEDAAFTLLA KLHDDNNASD FTEFGFWLEA TDQPSNSNSN SNYCTSNQMD SPPPTQSRRK  60
LWIGPNNPNP TTSIPPVNAR LVQAIEYLKN STTHNKEVLI QIWVPVNRGG KHVLITHNQP  120
YFLNPNSHSL LQYRNVSQNY QFAADKDSNE LVGLPGRVFL KKLPEWTPDV RFFKSEEYPR  180
VNYAHQHNVR GSIAVPVFEA GSGTCLGVVE IVTTIQKTHY HLELEHVCKA LEAVNLRSSG  240
ISSNPSKIKD QDCNESYLAA LAEIQYILTC VCDTHKLPLA QTWAPCIQQG KGGCLQSDEN  300
FASCVSTVDS SCYVRDQHVV PFHLACSEHH LLKGEGVAGG AFNTNQPCFA TDITAFSKAE  360
YPLSHHARMF GLCSAVAIRL RSIYTGSADF VLEFFLPLDC KNTEEQKIML SSLSSVIQQS  420
CRSLRVVTDQ ELQEEKEVVR LPIGEEESRK PVSSSYRDQD ASSWLSEMLD AQRKGKGAAA  480
VSENFKVTAT PWDYTQRESI HASTFSEPNQ NFEPKGGSFD FSSGTGSHSS GAKRAGERRR  540
SKTEKSISLQ VLRQYFAGSL KDAAKSIGVC PTTLKRICRQ HGITRWPSRK IKKVGHSLQK  600
LQLVIDSVHG AEGAIKLSSF YTNFPELNSP NNPGTSNFSA SKNDDHLQQV NTQPDGSPVT  660
TTSKSTSSSD SHNSSSSLFC SSGSKNCTTE ENPGGMPKRA HTETGLHDMG QEETKLLVRP  720
QSQKIQSNHN SVEPVCPWST SSNQVLGRFK VKAIFGKEKI RFSLQSHWGF RDVKHEVMRR  780
FNVEDVGKID LKYLDDDDEW VLLTCDADLE ECIDIHKFSK RRTIKVSLHH TNLGSSFGSS  840
GPA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015060524.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A3Q7EUL6	0.0	A0A3Q7EUL6_SOLLC; Uncharacterized protein
STRING	Solyc01g112190.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1598	24	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein