PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g053540.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 252aa    MW: 28611.4 Da    PI: 8.6959
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g053540.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Sopen01g053540.1 14 KGAWTKEEDERLISYIKTHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                      79******************************99************97 PP
2Myb_DNA-binding60.24.5e-1967111147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg++T+eEdel+++++ +lG++ W++Ia +++ gRt++++k++w+++
  Sopen01g053540.1  67 RGNFTEEEDELIIKLHSLLGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111
                       89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.807961IPR017930Myb domain
SuperFamilySSF466893.38E-3013108IPR009057Homeodomain-like
SMARTSM007175.4E-141363IPR001005SANT/Myb domain
PfamPF002497.4E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-241568IPR009057Homeodomain-like
CDDcd001675.17E-111661No hitNo description
PROSITE profilePS5129429.41162116IPR017930Myb domain
SMARTSM007176.3E-1866114IPR001005SANT/Myb domain
PfamPF002493.0E-1767111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2869116IPR009057Homeodomain-like
CDDcd001675.48E-1369112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLISYIK THGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIK LHSLLGNKWS LIAGRLPGRT DNEIKNYWNT HIRRKLLSRG  120
IDPTTHRPVN EPGTTQKVTT ISFAGGDHKI KDVEEDHNKM INVKAESGLS QLEDEIISSS  180
PFREQCPDLN LELRISPPSL QNYQHSPSRC FACSLGIQNS KDCNCSKNNI ASYNFLGLKS  240
NGVLDYRTLE TK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-301311626128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066308.10.0myb-related protein 308-like
SwissprotP813931e-114MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A3Q7EUM90.0A0A3Q7EUM9_SOLLC; Uncharacterized protein
STRINGSolyc01g111500.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-108myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]