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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopen01g052600.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 327aa MW: 37118 Da PI: 9.6353 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen01g052600.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 304.5 | 3.9e-93 | 15 | 327 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkgyye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalv 75
mdd g+re r++ y +++++ + +++ + aerda+++ern a++ekk+a+aerd a +qrd+a+aer+ a+
Sopen01g052600.1 15 MDDGGQREnrRHRMDYSkgcyapwnvvppyqmkDQEAFI--MHTKIRMVFAERDAAVEERNRAVIEKKEAYAERDFAIQQRDTAFAERDTAIK 105
899999888777775555899999999655432223333..6677777888****************************************** PP
GAGA_bind 76 erdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
erdn+++al + e +++ +l +gtk ++ + +++ +++ ++ r+ +a+pi+ +ea ++ ++k+++ +k +k ak+++
Sopen01g052600.1 106 ERDNAIAALHFLESTTNGSL---GCRTRGTKRPEQPKYHRNYNTDSVCI-NRDVPVADAYPISAISSEAAKALQVKRSKVNKGMSTKSAKSPR 194
***********999854433...34567888888777744455555555.5889999999999999999888888855544444444444444 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidl.vlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKm 260
k ++k +++ +++ + + skae++ dl +++++++Dest+P+PvC+CtG++rqCYkWG+GGWqS+CCtt +S yPLP+ +++r+aR++grKm
Sopen01g052600.1 195 K-TKKVNEDLNRHLTTDGSKAEWDAHDLgSIDQIQFDESTMPIPVCTCTGIPRQCYKWGSGGWQSSCCTTYLSEYPLPQLPNKRHARLGGRKM 286
4.6666677777777788**********88*************************************************************** PP
GAGA_bind 261 SqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
S+++f++lL + a dls p+DLk++WAkHGtn+++ti+
Sopen01g052600.1 287 SGSVFSRLLTRFAVADRDLSMPIDLKTYWAKHGTNRYITIK 327
****************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MQIQVCSSSS TTDKMDDGGQ RENRRHRMDY SKGCYAPWNV VPPYQMKDQE AFIMHTKIRM 60
VFAERDAAVE ERNRAVIEKK EAYAERDFAI QQRDTAFAER DTAIKERDNA IAALHFLEST 120
TNGSLGCRTR GTKRPEQPKY HRNYNTDSVC INRDVPVADA YPISAISSEA AKALQVKRSK 180
VNKGMSTKSA KSPRKTKKVN EDLNRHLTTD GSKAEWDAHD LGSIDQIQFD ESTMPIPVCT 240
CTGIPRQCYK WGSGGWQSSC CTTYLSEYPL PQLPNKRHAR LGGRKMSGSV FSRLLTRFAV 300
ADRDLSMPID LKTYWAKHGT NRYITIK
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ982315 | 0.0 | FJ982315.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC4) mRNA, complete cds. |
