PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g052520.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family DBB
Protein Properties Length: 212aa    MW: 23535.6 Da    PI: 5.8898
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g052520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                       C+ +e+  ++lfC  ++  lC++C ++ H
  Sopen01g052520.1  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                      7**************************998 PP
2zf-B_box25.72.4e-085291237
          zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                      + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  Sopen01g052520.1 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                      6689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003365.0E-9147IPR000315B-box-type zinc finger
CDDcd000214.68E-7345No hitNo description
PfamPF006434.6E-6334IPR000315B-box-type zinc finger
SMARTSM003363.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145196IPR000315B-box-type zinc finger
PfamPF006434.6E-65285IPR000315B-box-type zinc finger
CDDcd000218.06E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHLCNKLAS RHVRVGLADP SKIQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNEQGLPSTE  120
QGDVRREPAQ SFKLPMIDNH QPNRETAMTA VENNVNNSVK VENELIDLNS RPQRMHGQTS  180
NNQEQVMDML GGSNHESVGV VPDGPFKREP EK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-134HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015054823.11e-158B-box zinc finger protein 19
RefseqXP_015054827.11e-158B-box zinc finger protein 19
SwissprotC0SVM51e-81BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A3Q7EU211e-154A0A3Q7EU21_SOLLC; Uncharacterized protein
STRINGSolyc01g110370.2.11e-155(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.11e-80DBB family protein