PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g052300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | SRS | ||||||||
Protein Properties | Length: 216aa MW: 24361.1 Da PI: 8.2168 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 180.7 | 6.1e-56 | 18 | 152 | 5 | 154 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 +++CqdCGnqakkdC+++RCRtCCksrgf+C+thvkstWvp++ rr r++ l+ ++ ++++ ++ ++kr r++ + Sopen01g052300.1 18 SSRCQDCGNQAKKDCTYMRCRTCCKSRGFHCETHVKSTWVPVSTRRPRHHLLHHTTIQQQQLQNGPNPKRYRSN---------------EVIG 95 579*********************************************99988877666555454455554443...............1122 PP DUF702 98 keletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 e s+P evss+avfrc+rvss+d+ +++aYqt+v+i+GhvfkGiLydqG+++ Sopen01g052300.1 96 DDHEGGSFPGEVSSPAVFRCIRVSSIDNVVDQYAYQTSVKIAGHVFKGILYDQGPDN 152 3456789************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.5E-60 | 18 | 151 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.7E-27 | 21 | 62 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 3.8E-27 | 103 | 150 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MMRREEEEEG RVSSSLSSSR CQDCGNQAKK DCTYMRCRTC CKSRGFHCET HVKSTWVPVS 60 TRRPRHHLLH HTTIQQQQLQ NGPNPKRYRS NEVIGDDHEG GSFPGEVSSP AVFRCIRVSS 120 IDNVVDQYAY QTSVKIAGHV FKGILYDQGP DNESPRYNNY MAGESSSSDF QLHQPLILPP 180 TTTTTTSPPP STSTYPNLFS AFNMPGTQFF QYPKSS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015087135.1 | 1e-163 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | M1D203 | 1e-105 | M1D203_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g110140.2.1 | 1e-122 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4156 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-46 | SHI-related sequence 5 |