PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g051140.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 417aa    MW: 48615.6 Da    PI: 6.5674
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g051140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.78.6e-13893494
                      E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT.--TT-EEEEEE-SSSEE..EE CS
                B3  4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang.LkegDfvvFkldgrsefelvv 94
                      ++  +  ++ +r+ +p ++a ++ +gk   ++ + ++d+ ++ W + +  +k  g+ +++ GW++F ++n+ L+ gDf++F +dg+++f ++v
  Sopen01g051140.1  8 IF--NPESSAKRMKIPTSYA-TYkNGK--LPRNVFFRDRFNNMWPMGV--TKIEGALYFEYGWEKFIEDNNtLEYGDFMIFDYDGNETFDFKV 93
                      55..445566789*******.553555..7789***************..******************986489***********99995554 PP
2B332.71.3e-103514091677
                       EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
                B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77 
                        ++pk+f+e+  ++  +++t++l++++g++W+v++i   ++ r  + +GWk+Fv+ n+ keg
  Sopen01g051140.1 351 QYVPKSFCEQVPKSD-NKTTVVLRNSEGKRWKVNCIT-PNGYRA-FCGGWKQFVSYNKKKEG 409
                       479*****9995443.5579***************75.444444.456*******9986665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.869397IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.6E-16399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-16599IPR015300DNA-binding pseudobarrel domain
CDDcd100175.21E-10594No hitNo description
SMARTSM010192.0E-6597IPR003340B3 DNA binding domain
PfamPF023622.7E-10893IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-6229291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-6231291IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.629336417IPR003340B3 DNA binding domain
SMARTSM010190.91344417IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.8E-12349409IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-9350409IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-8351409IPR003340B3 DNA binding domain
CDDcd100173.19E-9352409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEKGFFRIFN PESSAKRMKI PTSYATYKNG KLPRNVFFRD RFNNMWPMGV TKIEGALYFE  60
YGWEKFIEDN NTLEYGDFMI FDYDGNETFD FKVLEMSGCV KEGPKCEKKK EVYVEHRNSV  120
EPKEKNRIGD NNDSSSDDDN ADNYMIEEEE SNDKEEVEKE EEEDEEEKET MEEVEDEAEE  180
EEDEEEIETT QTFKKRRSGS KAGRRKAVTC KVRNMVDRHG IDIFRSGSAT KPKNPYFVAK  240
IIAKRRNQQY VPIDVVRDYK LELPPSMTIR DSAGREFETK VKYWKDGRIC LQFTTRIFSN  300
NGLERQVKST DMVKNQQASI YDRGSSVKGQ KNTLTLQNCL NRLLLTVKAT QYVPKSFCEQ  360
VPKSDNKTTV VLRNSEGKRW KVNCITPNGY RAFCGGWKQF VSYNKKKEGC LSACQCK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015089724.10.0B3 domain-containing protein At5g60140-like
TrEMBLM1AQ141e-91M1AQ14_SOLTU; Uncharacterized protein
STRINGSolyc01g108940.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10912264
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-14B3 family protein