PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g049650.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HB-PHD
Protein Properties Length: 799aa    MW: 87711.1 Da    PI: 5.3514
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g049650.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox42.79.4e-14559611355
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                       kR t+ +  +++L e F+ n+yp+++++e+L k+lgLt  qV+ WF N R  +
  Sopen01g049650.1 559 KRKTYGEVSTKRLYESFKDNQYPDRDAKEKLGKELGLTAHQVSKWFENARHCH 611
                       79999999*****************************************9755 PP
2PHD38.13.4e-13213268151
                       SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
               PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                       +C+ Cg+    ++++++lCdg C++ fH+ C++++l +e++p +   wlC+ C++k
  Sopen01g049650.1 213 FCAKCGSmdLPADNDIILCDGaCERGFHQLCVEPPLLKEDIPPDdeGWLCPGCDCK 268
                       699****87677********66*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-13204271IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.4E-12210268IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.932211268IPR019787Zinc finger, PHD-finger
SMARTSM002493.4E-9213266IPR001965Zinc finger, PHD-type
CDDcd155043.87E-27213265No hitNo description
PfamPF006281.0E-10213268IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590214265IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.605.0E-14551608IPR009057Homeodomain-like
PROSITE profilePS5007114.042554614IPR001356Homeobox domain
SuperFamilySSF466894.71E-13555616IPR009057Homeodomain-like
SMARTSM003892.6E-11556618IPR001356Homeobox domain
CDDcd000869.68E-12559608No hitNo description
PfamPF000463.5E-11559612IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MSTLGNTSVS PEKARTAGGG HHTASAGNMS ENLGADQSRE SCENTVQNLN QSEYREKSPG  60
QPRKRKSISG SPISSTRLLR SKSKEKSGAS EAKNTVVTHD ATEEKKRKRR KKKHSKHIAA  120
NEFTRIRGHL RYLLQRIKYE QTLIEAYSGE GWKGQSLEKI KLEKELQRAK THIFRYKLKI  180
RDLFQRLDTL LAEGRLPASL FDNEGEIDSE DIFCAKCGSM DLPADNDIIL CDGACERGFH  240
QLCVEPPLLK EDIPPDDEGW LCPGCDCKVD CIDLLNDLQG TDLSVTDSWE KVYPKEAAAA  300
ASGEKLDDIS GLPSDDSEDD DYNPETPDVG KNDSEDESSS DESESDFYSA SEDLAEAPTK  360
DDEILGLSSE DSEDDDFNPD DPDKDEPVKT ESSSSDFTSD SEDFSLIVDT NRLRGDEQGV  420
SSSVDNSMPN SASLEEKAKV GKAKGNSLKD ELSYLMQSDS PLVSAKRHIE RLDYKKLHDE  480
TYGNGSSDSS DEDYDDGPLP KVRKLRNAKG AMASPSSTPA DIKYQSGKQK GIGHASDSGI  540
SEKLKVGGAG TSESPSSGKR KTYGEVSTKR LYESFKDNQY PDRDAKEKLG KELGLTAHQV  600
SKWFENARHC HRHSPNWNKI MSQKVSEESP SKSQIIGEPL GTESNSIIAS CNGVEKLEQP  660
KQCLNGEKGH AIDKSEEELL IQDTSGKKSS EPTKKVHTTS QGSEDTPRSK TSKKQKAKVG  720
TANSQNDNTT EQASGGTPCS KTSKKQKARV GTANSQNDNT TDQGPDDTPQ SKTRKKPMVK  780
VDTPNSQNVR RSSRLQKQG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KKRKRR
2104111KKRKRRKK
3104112KKRKRRKKK
4105110KRKRRK
5106112RKRRKKK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062395.10.0pathogenesis-related homeodomain protein
SwissprotP487861e-123PRH_PETCR; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7FCH30.0A0A3Q7FCH3_SOLLC; Uncharacterized protein
STRINGSolyc01g107410.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.17e-91Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain