PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g048830.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 347aa    MW: 39024.1 Da    PI: 6.794
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g048830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.6e-13167214355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Sopen01g048830.1 167 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 214
                       6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10167214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-17168226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-13169218No hitNo description
SuperFamilySSF474594.84E-17169230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-15170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEYYGFNQHW PISSYDELNA ISIANSFGHE NNLHESFISH QPLLGHKRPI ELSQIIEERP  60
LKNCKTSHSW NNNIEIDQIL SSQSVVSPNY SHLMNSSNNY TNQQVVTMKP KEETTNLSSS  120
SITFAADHCH QDSFANQNYM MFKAANNSSC QGANKSVSTN GKLTQAQDHI IAERKRREKL  180
SQRFIALSAL IPGLKKMDKA SVLGDAIKYL KQLQEKVKTL EEQTKKKSVE SVVFVKKYEL  240
YGDGENSSSD ENYSSGTVPV DEALPEIEAR ISEKDVLIRI HCEKSKGIVE KTVAEIEKLH  300
LSVINTCALS FGTSALDITI IAQMDEEFAM TVKDLVKNLR SALKVFM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14168242880Transcription factor MYC2
5gnj_B7e-14168242880Transcription factor MYC2
5gnj_E7e-14168242880Transcription factor MYC2
5gnj_F7e-14168242880Transcription factor MYC2
5gnj_G7e-14168242880Transcription factor MYC2
5gnj_I7e-14168242880Transcription factor MYC2
5gnj_M7e-14168242880Transcription factor MYC2
5gnj_N7e-14168242880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1172177ERKRRE
2173178RKRREK
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015086855.10.0transcription factor bHLH18-like
SwissprotQ9T0723e-64BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A3Q7ERR20.0A0A3Q7ERR2_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000130740.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-59bHLH family protein