PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g048420.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 379aa    MW: 41459.1 Da    PI: 4.8571
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g048420.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.28.5e-17218254135
              GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       C++Cgt +  Tp +Rrgp+g++tLCnaCGl+++ kg+
  Sopen01g048420.2 218 CHHCGTNEseTPAMRRGPSGPRTLCNACGLMWANKGM 254
                       ********9************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.20880115IPR010399Tify domain
SMARTSM009798.1E-1080115IPR010399Tify domain
PfamPF062003.5E-1283114IPR010399Tify domain
PROSITE profilePS5101712.838149191IPR010402CCT domain
PfamPF062032.5E-15149190IPR010402CCT domain
SMARTSM004012.4E-9212263IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12213263No hitNo description
PROSITE profilePS501148.59216260IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.8E-15216258IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.20E-16217261No hitNo description
PfamPF003207.9E-14218253IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MEAADNSRKM VGGQYEVVAF QQEYVNVPIR VDRYGGGGFE AHDISVGGGY EEAMSSGEEL  60
QVCSMPLVAG PVDSGRVMAV SSRTSELTIS FEGQVYVFPA VTPEKVQAVM LLLGGCEVPS  120
YVPNSNSVAL QSTKSVENDV PTRQNISPRM ASLIRFREKR KDRCFEKTIR YACRKEVAQR  180
MHRKNGQFAS LKEGGKSSAD NIDSGDSAAH SEPTLRRCHH CGTNESETPA MRRGPSGPRT  240
LCNACGLMWA NKGMFRDITK GGSHVPFDKN EPGTPDIKLS TFAPENSYLK QHQEGSSGET  300
KLTEENPSVT TAELDMQEAA ENFADSSPFR IRSSSVNIDD EQDNLDELAN ASGTEFEIPA  360
DFDEQIGIDS HMSVHWPVT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-177HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070000.10.0GATA transcription factor 19-like isoform X1
SwissprotQ8H1G04e-59GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A3Q7ESU50.0A0A3Q7ESU5_SOLLC; Uncharacterized protein
STRINGSolyc01g106040.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56022035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-62ZIM-like 1