PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g047060.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 474aa    MW: 52940.4 Da    PI: 6.549
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g047060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.61.3e-28225285159
                       ---SS-EEEEEEE--TT-S.S-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgse.fprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dg++WrKYGqK  kgs+ +pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+
  Sopen01g047060.1 225 MNDGCQWRKYGQKIAKGSPnCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 285
                       58***************9736*********99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.5E-31210287IPR003657WRKY domain
SuperFamilySSF1182901.83E-25218287IPR003657WRKY domain
PROSITE profilePS5081126.911220287IPR003657WRKY domain
SMARTSM007742.3E-35225286IPR003657WRKY domain
PfamPF031068.6E-26226285IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MENNKSENDN EVEIDLSLKL DAREEENEEN QIVESSQLNE KTQPKDQELP KTHEELSMLE  60
KEMKRMKEEN KVLRKAVEQT MKDYYDLQAK FSIHQNNHKD HKSFLSLSGN DDTNEGQTKV  120
PKILDILNTN RISSPTSLED DTMDGDHELG LSLTLVSSNS TTSSKLVEIL EEDQRKEKKD  180
HPSINHQLQN KPQNLGGLTS HVTTASPPNR KSRVSVRARC ESATMNDGCQ WRKYGQKIAK  240
GSPNCPRAYY RCTVAPGCPV RKQVQRCLED MSILITTYEG THNHPLPVGA TAMASTASAA  300
ASFMLVDSSI SPLLNHNSNL NQPLNFPNYH HNQAPNYHHS SSSSPYNNFS NLRNNILNSS  360
DPNNSSQGNL VLDLTKNMSN NNHQFPFASS SSNNHEIGHS NWMSKLSNYE GNNLFSGPKL  420
QVEHNNNNNN NNIPPMLAHE NMSAIASDPK FRVAVAAAIS SLINKDQSHS TGES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-21212289176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085455.10.0probable WRKY transcription factor 9
SwissprotQ9C9F01e-71WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A3Q7FAR10.0A0A3Q7FAR1_SOLLC; Uncharacterized protein
STRINGSolyc01g104550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72872129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.11e-58WRKY DNA-binding protein 9