PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g046210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 322aa MW: 35427 Da PI: 8.2263 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 58.5 | 1.5e-18 | 138 | 184 | 11 | 58 |
ZF-HD_dimer 11 kNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 +N Aa g+++DGCgEf+p+ g+ t +++ CaAC CHRnFHR+ ++ Sopen01g046210.1 138 HNYAAISNGYVLDGCGEFCPT-GAPETLESFICAACHCHRNFHRKVEV 184 79******************9.6667*******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-10 | 133 | 181 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 16.523 | 133 | 182 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 6.8E-17 | 138 | 181 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.6E-17 | 138 | 183 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-7 | 264 | 321 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MEMKGEERKS ESVVVIVVVV VVIVVVVVVV VVAVVVVVAV VVVVVNAVVV VVVVIDVVVV 60 GGGGGGGGGV VVVIVTVTQR DVKTEELSTV TQRDVKTEEL SNTKNTNHLN HITEQIFHSP 120 KVSIALAKFI MARATQKHNY AAISNGYVLD GCGEFCPTGA PETLESFICA ACHCHRNFHR 180 KVEVEVEDGA ESPIISINHP SHGTPLVIMD DPPPSQSKVR TGAQLCETSE KNNINVETKM 240 EMDGREIKVK KSKREYNGCS SSSVRIRLDP YQRKRIQIFA NEITGWKWKK SHEQIIPFCD 300 EIGITPNFLK NWINNTRRRT RT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015088823.1 | 1e-141 | zinc-finger homeodomain protein 4-like | ||||
TrEMBL | A0A3Q7EQA5 | 1e-105 | A0A3Q7EQA5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g103830.1.1 | 1e-102 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10889 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 4e-21 | homeobox protein 31 |