PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g045470.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ARF | ||||||||
Protein Properties | Length: 654aa MW: 72560.9 Da PI: 6.5105 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72 | 7.5e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +++a+e+ +++ ++l+ d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD ++F + Sopen01g045470.1 128 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVASDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDAFIFL--R 216 99****************************964333..4459************************************************..3 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r Sopen01g045470.1 217 GDSGELRVGVRR 228 48999*****97 PP | |||||||
2 | Auxin_resp | 114.1 | 1.3e-37 | 254 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t++ F+v+Y+Pr+s+seF+v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d ++rWp+S+WrsLk Sopen01g045470.1 254 ASHAIVTGTLFSVFYKPRTSQSEFIVSVNKYLEARNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNPSSRWPDSEWRSLK 336 6899*****************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.88E-43 | 119 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-40 | 125 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.45E-20 | 126 | 228 | No hit | No description |
Pfam | PF02362 | 8.4E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-20 | 128 | 230 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.166 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.7E-36 | 254 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.0E-6 | 532 | 576 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.465 | 540 | 633 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.94E-12 | 542 | 617 | No hit | No description |
Pfam | PF02309 | 7.8E-7 | 583 | 631 | IPR033389 | AUX/IAA domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence Send to blast |
MAHVAANHFG GGTHPGASAN NALYKELWHA CAGPLVTVPR EGERVYYFPQ GHMEQLEAST 60 HQGVDQHLPS FNLPAKILCK VMNVQLRAES ETDEVYAQIT LLPEQDQGEI TSPDPPPPEP 120 EKCTVHSFCK TLTASDTSTH GGFSVLRRHA DECLPPLDMS QQPPWQELVA SDLHGNEWHF 180 RHIFRGQPRR HLLTTGWSVF VSAKKLVAGD AFIFLRGDSG ELRVGVRRLM RQLNNMPSSV 240 ISSHSMHLGV LATASHAIVT GTLFSVFYKP RTSQSEFIVS VNKYLEARNH KLSVGMRFKM 300 RFEGEEVPER RFSGTIVGVG DNPSSRWPDS EWRSLKVHWD EPSSILRPDR VSPWDMEPLV 360 AATPTNTQPP QRNKRARPSV LPSPVQELPA LGMWKSPVDS PSSFSYCDPS RGRDLYPSPK 420 LSSAAKGLGY GENGSMPLST KTMYWSSQSE TCTESVAPAS EKRPANGCRL FGIELLDCPT 480 IDESSSVAMP SAVVEDQPAP SLNVDSDRNS EPSNPIPSVS CEPEKSSLRS THESQSKQIR 540 SCTKVHMQGK AVGRAVDLTR LDSYEDLLKK LEVMFEIEGE LRGSTKKWQV VYTDDEDDMM 600 MVGDDPWHEF CSMVRKIYVY TAEEAKKLSP KIKLPVVDVK PVSDGATVGN DEKA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 0.0 | 5 | 359 | 3 | 355 | Auxin response factor 1 |
4ldw_A | 0.0 | 5 | 359 | 3 | 355 | Auxin response factor 1 |
4ldw_B | 0.0 | 5 | 359 | 3 | 355 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM061154 | 0.0 | HM061154.1 Solanum lycopersicum auxin response factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015060280.1 | 0.0 | auxin response factor 1 | ||||
Swissprot | Q8L7G0 | 0.0 | ARFA_ARATH; Auxin response factor 1 | ||||
TrEMBL | A0A3Q7EPY4 | 0.0 | A0A3Q7EPY4_SOLLC; Auxin response factor | ||||
STRING | Solyc01g103050.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5838 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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