PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g045390.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 293aa    MW: 32969.4 Da    PI: 7.9435
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g045390.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.7e-3265120359
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                        vrYkeClkNhAas+Gg+a+DGCgEfmps geegt++al C+AC+CHRnFHR+e e 
  Sopen01g045390.1  65 IVRYKECLKNHAASMGGNATDGCGEFMPS-GEEGTIEALICSACNCHRNFHRKEIEG 120
                       68**************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.8E-2966118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-2566128IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.6E-3167118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.36668117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.68E-19206279IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-30213280IPR009057Homeodomain-like
TIGRFAMsTIGR015651.1E-26218274IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MELPSQDHED MPIPINSTYG HLIHHDPTPP NNANHIIPPS MNGPPIDAPP VATAADHHHV  60
PFKKIVRYKE CLKNHAASMG GNATDGCGEF MPSGEEGTIE ALICSACNCH RNFHRKEIEG  120
DQQQLASSCD CFHHVNNRVV GGGSTKKVYL GHNHHKTSLG PEPFGTIIPT RPPHHQMIMS  180
YNMGSLPNSE SEEHDIQDHH HHHIGGIMGM ARPLHHVKKR FRTKFTQEQK DKMLNFAEKV  240
GWKIQKQEEG VVQQFCQEVG VKRRVLKVWM HNNKHSLAKK NITTTIPNEN QLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-242192761875ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064420.10.0zinc-finger homeodomain protein 4
TrEMBLA0A3Q7EPX10.0A0A3Q7EPX1_SOLLC; Uncharacterized protein
STRINGSolyc01g102980.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-74homeobox protein 31