PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g044790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB
Protein Properties Length: 424aa    MW: 47462.4 Da    PI: 7.5551
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g044790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g W++eEde+l++ ++++G g+W+++++  g+ R++k+c++rw +yl
  Sopen01g044790.1 14 KGLWSPEEDEKLIKHITKFGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                      678*******************************************97 PP

2Myb_DNA-binding44.24.3e-1467109145
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       rg ++++E+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+
  Sopen01g044790.1  67 RGTFSQDEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109
                       899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-27664IPR009057Homeodomain-like
PROSITE profilePS5129424.969965IPR017930Myb domain
SuperFamilySSF466895.99E-2912108IPR009057Homeodomain-like
SMARTSM007174.9E-131363IPR001005SANT/Myb domain
PfamPF002493.4E-151461IPR001005SANT/Myb domain
CDDcd001672.16E-111761No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465116IPR009057Homeodomain-like
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129419.62166116IPR017930Myb domain
PfamPF002494.0E-1367109IPR001005SANT/Myb domain
CDDcd001677.27E-969109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KFGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQDEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EIENEEKASA NSNNKNNDKV SESSNNEFNF VEGHENGYST EKPIKPAVSS  180
LINTLERYPL IHEPNNIAPP THEFFTTSCK SPDLSNYLSF HNYSPNTNIL FNTKTSSSSA  240
ADNIVPDHHF NCSALTNATF STMSNSILST TISPLARNFN TNKFQNWEAC TISSNGSNHS  300
NGTSNSIELQ SNCSFFDNNA AAAFAWGSAG ATAAADCTGK SEREEIKWSE YLQTPFSLGV  360
SNNTINTQIP SHHELYDGET KSETQFMTQG SWLQNQTPQT SLQTAEVYSN NNFQRLPAVY  420
GQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067980.10.0transcription factor MYB61
TrEMBLA0A3Q7F9B40.0A0A3Q7F9B4_SOLLC; Uncharacterized protein
STRINGSolyc01g102340.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.11e-85myb domain protein 61