PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g044750.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 715aa    MW: 76458.4 Da    PI: 7.7972
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g044750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.4e-16454500455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY+k Lq
  Sopen01g044750.1 454 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLDEAIEYLKTLQ 500
                       6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.45E-17446504No hitNo description
Gene3DG3DSA:4.10.280.101.9E-20447508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-20447510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.228450499IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-13454500IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-17456505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MAIGKLESGQ QKISSTSNLS SFPENDLVEL KWQNGQIVMQ GQNSSAKKST VPNNLPSSAS  60
GDRDKYTGNS STSKIGKFGL MDTMLNDMSL SVPTGELDLI QEDEGVPWLG YPADDSLQQD  120
YCAQLLPEIS GVTANGQSGL SVFGLINKRG SSDKMIGDSH SVPVHNAVNF EQRNTSKVSP  180
SSRFSPLSSL PSQKGHASMP TLESGVSDVF SSKNSNTPIS VLGGSNQRKA SAGDVKSNKI  240
QKQNMPGNRS NLLNFSHFSR PATLVKAAKL QSSTGGSNIS DSPILEAKGK KGEEKVTIGD  300
NHVSIAATEN FLTSKKDNFP HYPTNGVSSQ LESRPSGASF HDRSCQVEQS DNAFRDCSSN  360
NDNTYDHFTS AKATKHIADG ERNVEHGVAC SSVCSGSSAE RGSSDQPLNL KRKTRDNEEF  420
ECRSEDVEEE SVGIKKPSAA RGGTGSKRSR AAEVHNLSER RRRDRINEKM RALQELIPNC  480
NKADKASMLD EAIEYLKTLQ LQVQIMSMGA GLCVPPMMFP MQHMHGAQMP HFSPMSLGMG  540
MGMGFGMGML EMNGRSSGYP MYPMPSVQGG HFPSPPIPAS TAYPGIAVSN RHVFAHPGQG  600
LPMSIPRASL GPLAGQPSTG AAVPMNVARE GVPVEIRGAQ PNLDSKTPVH KNSQIVQNAE  660
ASCPQNQTCS QVQATNEVLE KSAQKNDQLP DVIGSAANRL TNRTNVPGNE AGPSL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1458463ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063221.10.0transcription factor PIF3-like
RefseqXP_015063229.10.0transcription factor PIF3-like
TrEMBLA0A3Q7EQR70.0A0A3Q7EQR7_SOLLC; Uncharacterized protein
STRINGSolyc01g102300.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49652437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-46phytochrome interacting factor 3