PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g043700.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GRAS | ||||||||
Protein Properties | Length: 642aa MW: 72893.4 Da PI: 6.8246 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 367 | 2.6e-112 | 262 | 633 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l+ lL++cA+a+++ d + a++lL r++e+++p+gd ++Rla+y+++AL+arl+++++ ly a +ps+ s ++ l+a+k+f ++P+ + Sopen01g043700.1 262 LRALLTQCAQAMANYDSRTANELLMRIREHSTPHGDGTERLAHYLANALEARLSGTGTALYTAYAPSRIS---AANILKAYKAFITACPFKLL 351 5789************************************************************999998...899***************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s++ aN+ I + ++g+ ++HiiDf+i +G+QWp+L+q L+ R++gpp+lRiTg++ p++g + ++eetg+rL+k++++++vpf f++ +ak Sopen01g043700.1 352 SNIFANKYIRKVIAGAPKIHIIDFGILYGFQWPCLIQGLSMRAGGPPELRITGIDLPQPGfkPAGRVEETGRRLEKYCKRFNVPFVFKA-IAK 443 ***********************************************************9999**************************.7** PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 ++e+++leeL+v+++E+l+Vn+ ++l +++de+v +s+rd+vL+l+++++P+++++ + n++ F++rf eal ++s+l+d++ea+lpr Sopen01g043700.1 444 KWESITLEELEVQRDEVLVVNSLYRLGNIPDETVIPNSPRDAVLNLIRRIRPDLFIHGALNGTFNTPFFVTRFREALFHFSSLYDMFEATLPR 536 ********************************************************************************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370 e+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk+vpl+++++k ++ +r + + ++v+e+ +++++gWk+r ++++ Sopen01g043700.1 537 EDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCVRAGFKQVPLDQEIVKIVRNKVRSEYHRDFSVDEDGHWMLQGWKGRVIYAL 629 ********************************************************************999********************** PP GRAS 371 SaWr 374 S+W+ Sopen01g043700.1 630 SCWK 633 ***8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.988 | 236 | 613 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.9E-110 | 262 | 633 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 642 aa Download sequence Send to blast |
MDPRKEVIQN GVNNHPSFDQ DYFSNHVVGV GDSSPPPQEE GEKDYSDAMY KFLSQMLMEE 60 DDLENKPCMF HDCMALQAKE RYLSDVLHGS ENNYSPQSVI INPHDSSSFL SNYSPDSIES 120 PQWDLNFESP ASMSTLSNHD SFFTSFGNGH FEEGAVNVFQ SGSSSNSPTG LREKKNRHRG 180 DVAADQQRSN KQMATFVHDE SEPLEMYDNV LLCLNNPYVE QHSATSVTSY SPPNEAKKAS 240 KVGRPRGGRK HSSIVKKEMV DLRALLTQCA QAMANYDSRT ANELLMRIRE HSTPHGDGTE 300 RLAHYLANAL EARLSGTGTA LYTAYAPSRI SAANILKAYK AFITACPFKL LSNIFANKYI 360 RKVIAGAPKI HIIDFGILYG FQWPCLIQGL SMRAGGPPEL RITGIDLPQP GFKPAGRVEE 420 TGRRLEKYCK RFNVPFVFKA IAKKWESITL EELEVQRDEV LVVNSLYRLG NIPDETVIPN 480 SPRDAVLNLI RRIRPDLFIH GALNGTFNTP FFVTRFREAL FHFSSLYDMF EATLPREDED 540 RKLFEEEVFA RDAMNVIACE GTERVERPET YKQWQLRCVR AGFKQVPLDQ EIVKIVRNKV 600 RSEYHRDFSV DEDGHWMLQG WKGRVIYALS CWKPTKQSVK LV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 6e-43 | 264 | 635 | 35 | 421 | Protein SHORT-ROOT |
5b3h_E | 6e-43 | 264 | 635 | 35 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015058087.1 | 0.0 | scarecrow-like protein 11 isoform X2 | ||||
TrEMBL | Q00LP5 | 0.0 | Q00LP5_SOLLC; GRAS4 | ||||
STRING | Solyc01g100200.2.1 | 0.0 | (Solanum lycopersicum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G29060.1 | 0.0 | GRAS family protein |