PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g041800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26280.2 Da PI: 6.5763 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125 | 3.7e-39 | 37 | 137 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ +++yeA+ar++dPv G+v++il+lqqq+++l++ Sopen01g041800.1 37 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAAVHKVFGASNVSKLLLHIPANRRQDAVVTITYEAQARLSDPVFGCVSTILALQQQVASLQS 129 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 ela ++++ Sopen01g041800.1 130 ELAIVQTQ 137 ***99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.102 | 36 | 138 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-38 | 37 | 135 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MDERPSDGAD RRKGPGKRVS GAVEQQASGV LPASTAPCGA CKFLRRKCIN GCVFAPYFGS 60 DQGAARFAAV HKVFGASNVS KLLLHIPANR RQDAVVTITY EAQARLSDPV FGCVSTILAL 120 QQQVASLQSE LAIVQTQVMN SRYAMANAYH NISQEQHIAI LQPSYSNNSS ISNNNINLIN 180 NFNNSTTNNI FDHQLHGSVT CTANNSPSFD PIHQLHEEEE EEEEESHNPL AFTNHMFHSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-39 | 27 | 144 | 1 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-39 | 27 | 144 | 1 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081743.1 | 1e-180 | LOB domain-containing protein 20-like | ||||
Swissprot | Q9SRV3 | 4e-69 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | M1C1R4 | 1e-135 | M1C1R4_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g098220.1.1 | 1e-142 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA43 | 24 | 669 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-57 | LOB domain-containing protein 20 |