PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g041630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 155aa MW: 17273.8 Da PI: 10.3363 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.9 | 2e-11 | 12 | 59 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i ++ r v fskRr+g++ K eEL + +v +++s+ gk y+y Sopen01g041630.1 12 KITKQTARMVAFSKRRKGLFRKSEELESMSSSRVTSVVISPFGKPYTY 59 68999******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.53 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.0E-10 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.27E-15 | 4 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-11 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-15 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-11 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-11 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MGTGKKKIEI EKITKQTARM VAFSKRRKGL FRKSEELESM SSSRVTSVVI SPFGKPYTYG 60 NVNSVIKKYF STCIRPEIST PAMNSHHSSS NVSGESLGSK SSSTPNGNGL RNWVEGIDVE 120 ECQNLNQLLM LKKQLEGTRE KIVSKESESF QALFM |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015081733.1 | 1e-110 | MADS-box protein SVP-like | ||||
TrEMBL | A0A3Q7EMH5 | 1e-102 | A0A3Q7EMH5_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g098070.1.1 | 1e-103 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2337 | 17 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 6e-11 | AGAMOUS-like 29 |