PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g040420.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 109aa MW: 12316.9 Da PI: 10.7193 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 48.5 | 2e-15 | 6 | 83 | 18 | 95 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l r++ + +t++ + ++ +i l+d+ Sopen01g040420.2 6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLVLHLSAIVILAHLIDK 83 5789******************************************99999999999988888888888888888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 6.8E-25 | 3 | 67 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.44E-16 | 4 | 85 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.1E-18 | 8 | 68 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK 60 TVNSLHLVLH LSAIVILAHL IDKRTLVFIV VSCVALLVKP LQSFRFFSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 4e-21 | 2 | 67 | 5 | 70 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT014143 | 1e-105 | BT014143.1 Lycopersicon esculentum clone 133262F, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024983936.1 | 2e-40 | dr1-associated corepressor homolog | ||||
Swissprot | Q14919 | 8e-19 | NC2A_HUMAN; Dr1-associated corepressor | ||||
TrEMBL | M0ZUP5 | 6e-39 | M0ZUP5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc01g096710.2.1 | 1e-39 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400008518 | 1e-39 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 5e-40 | nuclear factor Y, subunit C11 |