PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g040420.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NF-YC
Protein Properties Length: 109aa    MW: 12316.9 Da    PI: 10.7193
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g040420.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC48.52e-156831895
             NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdi 95
                      ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  +     +t++   +   ++  +i   l+d+
  Sopen01g040420.2  6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLVLHLSAIVILAHLIDK 83
                      5789******************************************99999999999988888888888888888775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.8E-25367IPR009072Histone-fold
SuperFamilySSF471132.44E-16485IPR009072Histone-fold
PfamPF008081.1E-18868IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK  60
TVNSLHLVLH LSAIVILAHL IDKRTLVFIV VSCVALLVKP LQSFRFFSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-21267570Transcription Regulator NC2 alpha chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141431e-105BT014143.1 Lycopersicon esculentum clone 133262F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024983936.12e-40dr1-associated corepressor homolog
SwissprotQ149198e-19NC2A_HUMAN; Dr1-associated corepressor
TrEMBLM0ZUP56e-39M0ZUP5_SOLTU; Uncharacterized protein
STRINGSolyc01g096710.2.11e-39(Solanum lycopersicum)
STRINGPGSC0003DMT4000085181e-39(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.15e-40nuclear factor Y, subunit C11