PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen01g040080.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

HD-ZIP

Protein Properties

Length: 239aa MW: 27167.1 Da PI: 4.8333

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen01g040080.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61	1.9e-19	45	96	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k Sopen01g040080.1 45 RRFSDEQIKSLETMFETETKLEPRKKLQLARELGLEPRQVAIWFQNKRARWK 96 48*************************************************9 PP
2	HD-ZIP_I/II	123	1.5e-39	44	134	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 rr+s+eq+k+LE++Fe+e+kLep++K +lareLgl+prqva+WFqn+RAR+k+kqlE+dy+ Lk++yd+l+++ e+L ke+++L +l++ Sopen01g040080.1 44 ARRFSDEQIKSLETMFETETKLEPRKKLQLARELGLEPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYEALMKEKQSLLIQLQK 134 69***********************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.36E-19	22	100	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.552	38	98	IPR001356	Homeobox domain
SMART	SM00389	9.2E-16	41	102	IPR001356	Homeobox domain
Pfam	PF00046	8.0E-17	45	96	IPR001356	Homeobox domain
CDD	cd00086	3.51E-15	45	99	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.1E-19	45	105	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	69	78	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	73	96	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	78	94	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	98	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MFDAGEFSPS SSTAVVSAEC FSSSSCFSSL SSSKKKKIHS SNNARRFSDE QIKSLETMFE 60 TETKLEPRKK LQLARELGLE PRQVAIWFQN KRARWKSKQL ERDYSILKSN YDNLASQYEA 120 LMKEKQSLLI QLQKLKEIES DNRCSVIKKN EMEGMPSLSF DLSSQHGTNG VISDDDIDSS 180 IRADYLGLDD DAEHHLLKIA EAGDSSLTSP ENWGCLDDDG ILNHQPNSSS YDQWWDFWS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975440	0.0	HG975440.1 Solanum pennellii chromosome ch01, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015068739.1	1e-176	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	3e-63	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A3Q7EMS0	1e-152	A0A3Q7EMS0_SOLLC; Uncharacterized protein
STRING	Solyc01g096320.2.1	1e-153	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2041	23	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.2	2e-49	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]