PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g039850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Dof | ||||||||
Protein Properties | Length: 256aa MW: 27212.1 Da PI: 9.0423 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 47.1 | 5e-15 | 37 | 64 | 35 | 62 |
zf-Dof 35 aCrryWtkGGalrnvPvGggrrknkkss 62 +C ryWt+GG+lrnvPvGgg+rknk+ s Sopen01g039850.1 37 NCPRYWTEGGTLRNVPVGGGSRKNKRLS 64 8************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-8 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-9 | 37 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MESTQWSTHE EIGVVKSSMG AEIINKKVRP VKDGAINCPR YWTEGGTLRN VPVGGGSRKN 60 KRLSSSSSSQ KLPDLNPNPS SHHQNPNNIV IGSNQDLSLG FRTVPQDHHT SFHGVIPQFL 120 EFPKMDGSNN HLGSTQISAL ELLRTGIASR GFTSFISSAS TPDLNALYNS GFPFQELKPS 180 AGSTDHAASL SNSNYSSGGP GGLENGSGAR IMFPLGGLKQ LSSTNQVDHL TKGQENNNST 240 AGLYWSGMIS GTGGSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069878.1 | 1e-178 | dof zinc finger protein DOF2.5-like | ||||
TrEMBL | A0A3Q7ELV1 | 1e-162 | A0A3Q7ELV1_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g096120.2.1 | 1e-163 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.4 | 2e-28 | Dof family protein |